[R-pkg-devel] Two errors

[Sharon Bewick]

1. I�m trying to upload my R package. However, I use the ape function seq_root2tip but for the sake of speed am calling it using .Call:

toroot<-.Call(seq_root2tip, nt$edge, length(nt$tip.label), nt$Nnode)

How do I get R to recognize the seq_root2tip function from ape in this C call? It is throwing up a NOTE that is getting my package rejected:

shade_branch: no visible binding for global variable �seq_root2tip�

but seq_root2tip is a function, not a global variable.

2. I�m also getting a NOTE about: no visible global function definition for �phy_tree<-�

I have declared phy_tree in the NAMESPACE file: importFrom(phyloseq,phy_tree)

I don�t know what the problem is�

Thanks!
Sharon

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