[R-pkg-devel] ORCID ID finder via tools::CRAN_package_db() ?

[Dirk Eddelbuettel]

On 20 August 2024 at 07:57, Dirk Eddelbuettel wrote:
| 
| Hi Kurt,
| 
| On 20 August 2024 at 14:29, Kurt Hornik wrote:
| | I think for now you could use something like what I attach below.
| | 
| | Not ideal: I had not too long ago starting adding orcidtools.R to tools,
| | which e.g. has .persons_from_metadata(), but that works on the unpacked
| | sources and not the CRAN package db.  Need to think about that ...
| 
| We need something like that too as I fat-fingered the string 'ORCID'. See
| fortune::fortunes("Dirk can type").
| 
| Will the function below later. Many thanks for sending it along.

Very nice. Resisted my common impulse to make it a data.table for easy
sorting via keys etc.  After running your code the line

   head(with(a, sort_by(a, ~ family + given)), 100)

shows that we need a bit more QA as person entries are not properly split
between 'family' and 'given', use the URL and that we have repeats.
Excluding those is next.

Dirk
 
| Dirk
| 
| | 
| | Best
| | -k
| | 
| | ********************************************************************
| | x <- tools::CRAN_package_db()
| | a <- lapply(x[["Authors using R"]],
| |             function(a) {
| |                 if(!is.na(a)) {
| |                     a <- tryCatch(utils:::.read_authors_at_R_field(a), 
| |                                   error = identity)
| |                     if (inherits(a, "person")) 
| |                         return(a)
| |                 }
| |                 NULL
| |             })
| | a <- do.call(c, a)
| | a <- lapply(a,
| |             function(e) {
| |                 if(is.null(o <- e$comment["ORCID"]) || is.na(o))
| |                     return(NULL)
| |                 cbind(given = paste(e$given, collapse = " "),
| |                       family = paste(e$family, collapse = " "),
| |                       oid = unname(o))
| |             })
| | a <- as.data.frame(do.call(rbind, a))
| | ********************************************************************
| | 
| | > Salut Thierry,
| | 
| | > On 20 August 2024 at 13:43, Thierry Onkelinx wrote:
| | > | Happy to help. I'm working on a new version of the checklist package. I could
| | > | export the function if that makes it easier for you.
| | 
| | > Would be happy to help / iterate. Can you take a stab at making the
| | > per-column split more robust so that we can bulk-process all non-NA entries
| | > of the returned db?
| | 
| | > Best, Dirk
| | 
| | > -- 
| | > dirk.eddelbuettel.com | @eddelbuettel | edd using debian.org
| 
| -- 
| dirk.eddelbuettel.com | @eddelbuettel | edd using debian.org

-- 
dirk.eddelbuettel.com | @eddelbuettel | edd using debian.org