[R-pkg-devel] Problems with devtools::build() in R

[Gábor Csárdi]

Seems like you are on R 4.2.x, so you could try this one:
https://github.com/R-macos/gcc-darwin-arm64/releases

Gabor

On Tue, May 16, 2023 at 7:16 PM Jarrett Phillips
<phillipsjarrett1 using gmail.com> wrote:
>
> Installing from the URL you provide, as well as doing R CMD build HACSim as
> suggested by @JeffNewmiller fails.
>
> When trying the latter solution, I get the same error as the one provided
> in my original post.
>
> Any thoughts?
>
>
>
>
>
> On Tue, May 16, 2023 at 12:52 PM Jarrett Phillips <
> phillipsjarrett1 using gmail.com> wrote:
>
> > Hi Duncan,
> >
> > I actually installed gfortran from
> >
> > https://github.com/fxcoudert/gfortran-for-macOS/releases
> >
> > but I can instead install from the URL you provide.
> >
> > Hopefully this fixes the problem.
> >
> > I will respond here if there are still issues.
> >
> > Thanks.
> >
> > Cheers,
> >
> > Jarrett
> >
> >
> > On Tue, May 16, 2023 at 12:39 PM Duncan Murdoch <murdoch.duncan using gmail.com>
> > wrote:
> >
> >> On 16/05/2023 12:07 p.m., Jarrett Phillips wrote:
> >> > Hi All,
> >> >
> >> > I'm trying to generate a `tar.gz` file on a Mac for R package
> >> submission to
> >> > CRAN but am having issues.
> >> >
> >> > I'm using `devtools`, specifically `build()` and `install()`.
> >> >
> >> > My package relies on compiled code via `Rcpp/RcppArmadillo`.
> >> >
> >> >      build("HACSim_OO")
> >> >      ── R CMD build
> >> > ─────────────────────────────────────────────────────────────────
> >> >      ✔  checking for file ‘/Users/jarrettphillips/Desktop/HAC
> >> > simulation/HACSim_OO/DESCRIPTION’ ...
> >> >      ─  preparing ‘HACSim’:
> >> >      ✔  checking DESCRIPTION meta-information ...
> >> >      ─  cleaning src
> >> >      ─  installing the package to process help pages
> >> >           -----------------------------------
> >> >      ─  installing *source* package ‘HACSim’ ...
> >> >         ** using staged installation
> >> >         ** libs
> >> >         clang++ -arch arm64 -std=gnu++11 -
> >> > I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
> >> >
> >>  -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include'
> >> >
> >> -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppArmadillo/include'
> >> > -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2
> >> -Wall
> >> > -pedantic -fdiagnostics-color=always -c RcppExports.cpp -o RcppExports.o
> >> >         clang++ -arch arm64 -std=gnu++11
> >> > -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
> >> >
> >>  -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include'
> >> >
> >> -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppArmadillo/include'
> >> > -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2
> >> -Wall
> >> > -pedantic -fdiagnostics-color=always -c accumulate.cpp -o accumulate.o
> >> >         clang++ -arch arm64 -std=gnu++11 -dynamiclib
> >> > -Wl,-headerpad_max_install_names -undefined dynamic_lookup
> >> -single_module
> >> > -multiply_defined suppress
> >> -L/Library/Frameworks/R.framework/Resources/lib
> >> > -L/opt/R/arm64/lib -o HACSim.so RcppExports.o accumulate.o
> >> > -L/Library/Frameworks/R.framework/Resources/lib -lRlapack
> >> > -L/Library/Frameworks/R.framework/Resources/lib -lRblas
> >> > -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1
> >> > -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lquadmath
> >> > -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
> >> > -Wl,CoreFoundation
> >> >         ld: warning: directory not found for option
> >> > '-L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1'
> >> >         ld: warning: directory not found for option
> >> > '-L/opt/R/arm64/gfortran/lib'
> >> >         ld: library not found for -lgfortran
> >> >         clang: error: linker command failed with exit code 1 (use -v to
> >> see
> >> > invocation)
> >> >         make: *** [HACSim.so] Error 1
> >> >         ERROR: compilation failed for package ‘HACSim’
> >> >      ─  removing
> >> >
> >> ‘/private/var/folders/r4/xm5blbcd2tn06tjv00lm1c780000gn/T/RtmpN4uaYR/Rinstdf4219594de/HACSim’
> >> >           -----------------------------------
> >> >      ERROR: package installation failed
> >> >      Error in `(function (command = NULL, args = character(),
> >> > error_on_status = TRUE, …`:
> >> >      ! System command 'R' failed
> >> >       ---
> >> >       Exit status: 1
> >> >       stdout & stderr: <printed>
> >> >       ---
> >> >      Type .Last.error to see the more details.
> >> >
> >> > `clang` is installed (since I am able to run the code within my package)
> >> > and I've verified by typing `gcc` in the Mac Terminal. I've also
> >> installed
> >> > `Homebrew` and `gfortran`, verifying via typing in the Terminal.
> >> >
> >> > Any idea on what's going on how to fix the issue(s)?
> >>
> >> You don't say how you installed gfortran, but it sounds as though you
> >> installed Homebrew's build of it.  You should install the tools as
> >> available from https://mac.r-project.org/tools/.
> >>
> >> Duncan Murdoch
> >>
> >>
>
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>
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