[R-pkg-devel] [External] Re: namespace error with rlang

[Zhang, Xueqiong]

Great! The error message is gone after I resent to the winbuilder.
Thanks,

Joan Zhang, MS
Research Informatics Analyst
Larsen Lab - Emory Transplant Center


From: Uwe Ligges <ligges using statistik.tu-dortmund.de>
Date: Wednesday, August 17, 2022 at 10:40 AM
To: Zhang, Xueqiong <joan.zhang using emory.edu>, r-package-devel using r-project.org <r-package-devel using r-project.org>
Subject: Re: [External] Re: namespace error with rlang
Ah, this is from the winbuilder on demand service for R-release and not
a CRAN incoming check!

I moved an outated rlang away, it should work now.

Best,
Uwe Ligges


On 17.08.2022 14:33, Zhang, Xueqiong wrote:
> Thanks so much!
>
> Below are the information related to my submission on Tuesday night
> (08/17/2022) -
>
> *_1. My session info:_*
> R version 4.1.0 (2021-05-18)
>
> Platform: x86_64-apple-darwin17.0 (64-bit)
>
> Running under: macOS 12.5
>
> Matrix products: default
>
> LAPACK:
> /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
>
> locale:
>
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
>
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
>
> [1] rstudioapi_0.13        XVector_0.32.0         magrittr_2.0.3
>
>   [4] BiocGenerics_0.38.0    zlibbioc_1.38.0        IRanges_2.26.0
>
>   [7] tidyselect_1.1.2       R6_2.5.1               rlang_1.0.4
>
> [10] fansi_1.0.3            httr_1.4.3             GenomeInfoDb_1.28.4
>
> [13] dplyr_1.0.9            tools_4.1.0            parallel_4.1.0
>
> [16] utf8_1.2.2             DBI_1.1.3              cli_3.3.0
>
> [19] assertthat_0.2.1       tibble_3.1.8           lifecycle_1.0.1
>
> [22] crayon_1.5.1           brio_1.1.3             GenomeInfoDbData_1.2.6
>
> [25] purrr_0.3.4            vctrs_0.4.1            S4Vectors_0.30.2
>
> [28] fs_1.5.2               bitops_1.0-7           RCurl_1.98-1.7
>
> [31] testthat_3.1.4         glue_1.6.2             pillar_1.8.0
>
> [34] compiler_4.1.0         generics_0.1.3         Biostrings_2.60.2
>
> [37] stats4_4.1.0           pkgconfig_2.0.3
>
> *_2. check log_*
>
> * using log directory 'd:/RCompile/CRANguest/R-release/epitopR.Rcheck'
>
> * using R version 4.2.1 (2022-06-23 ucrt)
>
> * using platform: x86_64-w64-mingw32 (64-bit)
>
> * using session charset: UTF-8
>
> * checking for file 'epitopR/DESCRIPTION' ... OK
>
> * checking extension type ... Package
>
> * this is package 'epitopR' version '0.1.0'
>
> * package encoding: UTF-8
>
> * checking CRAN incoming feasibility ... NOTE
>
> Maintainer: 'Joan Zhang <joan.zhang using emory.edu>'
>
> New submission
>
> Possibly misspelled words in DESCRIPTION:
>
>    DK (5:725)
>
>    Dhanda (5:682)
>
>    JA (5:678)
>
>    MHC (3:24, 5:50, 5:250)
>
>    Mahajan (5:659)
>
>    Overton (5:670)
>
>    Sette (5:729)
>
>    epitope (5:355)
>
>    histocompatibility (5:61)
>
> * checking package namespace information ... OK
>
> * checking package dependencies ... OK
>
> * checking if this is a source package ... OK
>
> * checking if there is a namespace ... OK
>
> * checking for hidden files and directories ... OK
>
> * checking for portable file names ... OK
>
> * checking whether package 'epitopR' can be installed ... ERROR
>
> Installation failed.
>
> See 'd:/RCompile/CRANguest/R-release/epitopR.Rcheck/00install.out' for
> details.
>
> * DONE
>
> Status: 1 ERROR, 1 NOTE
>
> *_3. install out_*
>
> * installing *source* package 'epitopR' ...
>
> ** using staged installation
>
> ** R
>
> ** inst
>
> ** byte-compile and prepare package for lazy loading
>
> Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck =
> vI[[i]]) :
>
>    namespace 'rlang' 1.0.1 is being loaded, but >= 1.0.2 is required
>
> Calls: <Anonymous> ... namespaceImport -> loadNamespace ->
> namespaceImport -> loadNamespace
>
> Execution halted
>
> ERROR: lazy loading failed for package 'epitopR'
>
> * removing 'd:/RCompile/CRANguest/R-release/lib/epitopR'
>
> * restoring previous 'd:/RCompile/CRANguest/R-release/lib/epitopR'
>
> *From: *Uwe Ligges <ligges using statistik.tu-dortmund.de>
> *Date: *Wednesday, August 17, 2022 at 3:28 AM
> *To: *Zhang, Xueqiong <joan.zhang using emory.edu>,
> r-package-devel using r-project.org <r-package-devel using r-project.org>
> *Subject: *[External] Re: namespace error with rlang
>
>
>
> On 17.08.2022 03:30, Zhang, Xueqiong wrote:
>  > error still exist after I removed both of testthat and rlang, and then
>  > reinstalled testthat.
>  >
>  > Would you please help how to fix?
>  >
>  > Thanks.
>  >
>  > *From: *Zhang, Xueqiong <joan.zhang using emory.edu>
>  > *Date: *Tuesday, August 16, 2022 at 7:35 PM
>  > *To: *ligges using statistik.tu-dortmund.de <ligges using statistik.tu-dortmund.de>,
>  > r-package-devel using r-project.org <r-package-devel using r-project.org>
>  > *Subject: *namespace error with rlang
>  >
>  > Hi all,
>  >
>  >    My package passed the �R CMD check� on my local machine, however it
>  > returns error of �namespace 'rlang' 1.0.1 is being loaded, but >= 1.0.2
>  > is required� when I sent it to win-builder.r-project.org .
>  > I actually do have rlang 1.0.4 install based on session info. What
>  > should I do?
>  >
>  > Thanks!
>  >
>  > /Joan /
>  >
>
>
> Please provide the references and a full check log. Which version of R?
> Which OS? Date/Time  when it happened (as packages may change vbersion
> or status)?
>
> I keep "r-package-devel" CCed as that is indeed the right address for
> asking such questions (rather than sending mails to individual members
> of the CRAN team).
>
>
> Best,
> Uwe Ligges
>

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