[R-pkg-devel] [External] Re: namespace error with rlang

[Zhang, Xueqiong]

Thanks so much!
Below are the information related to my submission on Tuesday night (08/17/2022) -

1. My session info:
R version 4.1.0 (2021-05-18)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS 12.5

Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] rstudioapi_0.13        XVector_0.32.0         magrittr_2.0.3
 [4] BiocGenerics_0.38.0    zlibbioc_1.38.0        IRanges_2.26.0
 [7] tidyselect_1.1.2       R6_2.5.1               rlang_1.0.4
[10] fansi_1.0.3            httr_1.4.3             GenomeInfoDb_1.28.4
[13] dplyr_1.0.9            tools_4.1.0            parallel_4.1.0
[16] utf8_1.2.2             DBI_1.1.3              cli_3.3.0
[19] assertthat_0.2.1       tibble_3.1.8           lifecycle_1.0.1
[22] crayon_1.5.1           brio_1.1.3             GenomeInfoDbData_1.2.6
[25] purrr_0.3.4            vctrs_0.4.1            S4Vectors_0.30.2
[28] fs_1.5.2               bitops_1.0-7           RCurl_1.98-1.7
[31] testthat_3.1.4         glue_1.6.2             pillar_1.8.0
[34] compiler_4.1.0         generics_0.1.3         Biostrings_2.60.2
[37] stats4_4.1.0           pkgconfig_2.0.3

2. check log
* using log directory 'd:/RCompile/CRANguest/R-release/epitopR.Rcheck'
* using R version 4.2.1 (2022-06-23 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* checking for file 'epitopR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'epitopR' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Joan Zhang <joan.zhang using emory.edu>'

New submission

Possibly misspelled words in DESCRIPTION:
  DK (5:725)
  Dhanda (5:682)
  JA (5:678)
  MHC (3:24, 5:50, 5:250)
  Mahajan (5:659)
  Overton (5:670)
  Sette (5:729)
  epitope (5:355)
  histocompatibility (5:61)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'epitopR' can be installed ... ERROR
Installation failed.
See 'd:/RCompile/CRANguest/R-release/epitopR.Rcheck/00install.out' for details.
* DONE
Status: 1 ERROR, 1 NOTE

3. install out

* installing *source* package 'epitopR' ...

** using staged installation

** R

** inst

** byte-compile and prepare package for lazy loading

Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :

  namespace 'rlang' 1.0.1 is being loaded, but >= 1.0.2 is required

Calls: <Anonymous> ... namespaceImport -> loadNamespace -> namespaceImport -> loadNamespace

Execution halted

ERROR: lazy loading failed for package 'epitopR'

* removing 'd:/RCompile/CRANguest/R-release/lib/epitopR'

* restoring previous 'd:/RCompile/CRANguest/R-release/lib/epitopR'


From: Uwe Ligges <ligges using statistik.tu-dortmund.de>
Date: Wednesday, August 17, 2022 at 3:28 AM
To: Zhang, Xueqiong <joan.zhang using emory.edu>, r-package-devel using r-project.org <r-package-devel using r-project.org>
Subject: [External] Re: namespace error with rlang


On 17.08.2022 03:30, Zhang, Xueqiong wrote:
> error still exist after I removed both of testthat and rlang, and then
> reinstalled testthat.
>
> Would you please help how to fix?
>
> Thanks.
>
> *From: *Zhang, Xueqiong <joan.zhang using emory.edu>
> *Date: *Tuesday, August 16, 2022 at 7:35 PM
> *To: *ligges using statistik.tu-dortmund.de <ligges using statistik.tu-dortmund.de>,
> r-package-devel using r-project.org <r-package-devel using r-project.org>
> *Subject: *namespace error with rlang
>
> Hi all,
>
>    My package passed the �R CMD check� on my local machine, however it
> returns error of �namespace 'rlang' 1.0.1 is being loaded, but >= 1.0.2
> is required� when I sent it to win-builder.r-project.org .
> I actually do have rlang 1.0.4 install based on session info. What
> should I do?
>
> Thanks!
>
> /Joan /
>


Please provide the references and a full check log. Which version of R?
Which OS? Date/Time  when it happened (as packages may change vbersion
or status)?

I keep "r-package-devel" CCed as that is indeed the right address for
asking such questions (rather than sending mails to individual members
of the CRAN team).


Best,
Uwe Ligges

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