[R-pkg-devel] a problem with the underscore in a R function document

[Tiago Olivoto]

I had a similar issue when submitting metan 1.17.0 to CRAN. (Escaped LaTeX
specials: \&)
I simply removed '\' and it got passed in the tests.
Best
Olivoto

Em sáb., 11 de jun. de 2022 às 09:23, Yaoyong Li <liyaoyong85 using gmail.com>
escreveu:

> Hello,
>
> I just got a problem in a function document in a package I developed.The
> file containing the document is generatingCDSaaFile.Rd. The problem is
> related to the underscore I used in the following sentence
>
>       and the last part is ‘\_AAseq.txt.gz’
>
> I got a 'note' message when the package was checked in the CRAN:
>
> checkRd: (-1) generatingCDSaaFile.Rd:72: Escaped LaTeX specials: \_
>
> I don't think I saw this kind of message in the past (say six months
> ago). A copy of the check result in CRAN is appended below. As you can
> see, I also got the same problem in other places in the document. I
> have been trying to fix the problem via searching Google. I have tried
> to replace "\_" with "\textunderscore " as some internet post
> suggested, but this did not solve the problem.
>
> So I just wonder if anyone can help me with the problem. Please let me
> know if any more information is needed.
>
>
> Best regards,
>
> Yaoyong
>
> #####################################################
>
> CRAN Package Check Results for Package geno2proteo
> <https://cran.r-project.org/web/packages/geno2proteo/index.html>
>
> Last updated on 2022-06-11 11:52:26 CEST.
> FlavorVersionTinstallTcheckTtotalStatusFlags
> r-devel-linux-x86_64-debian-clang
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-devel-linux-x86_64-debian-clang
> >
> 0.0.5 17.31 170.54 187.85 NOTE
> <
> https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/geno2proteo-00check.html
> >
> r-devel-linux-x86_64-debian-gcc
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-devel-linux-x86_64-debian-gcc
> >
> 0.0.5 12.00 130.58 142.58 NOTE
> <
> https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/geno2proteo-00check.html
> >
> r-devel-linux-x86_64-fedora-clang
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-devel-linux-x86_64-fedora-clang
> >
> 0.0.5 220.04 NOTE
> <
> https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/geno2proteo-00check.html
> >
> r-devel-linux-x86_64-fedora-gcc
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-devel-linux-x86_64-fedora-gcc
> >
> 0.0.5 229.54 NOTE
> <
> https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/geno2proteo-00check.html
> >
> r-devel-windows-x86_64
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-devel-windows-x86_64
> >
> 0.0.5 242.00 470.00 712.00 NOTE
> <
> https://www.r-project.org/nosvn/R.check/r-devel-windows-x86_64/geno2proteo-00check.html
> >
> r-patched-linux-x86_64
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-patched-linux-x86_64
> >
> 0.0.5 12.58 164.99 177.57 OK
> <
> https://www.r-project.org/nosvn/R.check/r-patched-linux-x86_64/geno2proteo-00check.html
> >
> r-release-linux-x86_64
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-release-linux-x86_64
> >
> 0.0.5 OK
> <
> https://www.r-project.org/nosvn/R.check/r-release-linux-x86_64/geno2proteo-00check.html
> >
> r-release-macos-arm64
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-release-macos-arm64
> >
> 0.0.5 65.00 OK
> <
> https://www.r-project.org/nosvn/R.check/r-release-macos-arm64/geno2proteo-00check.html
> >
> r-release-macos-x86_64
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-release-macos-x86_64
> >
> 0.0.5 89.00 OK
> <
> https://www.r-project.org/nosvn/R.check/r-release-macos-x86_64/geno2proteo-00check.html
> >
> r-release-windows-x86_64
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-release-windows-x86_64
> >
> 0.0.5 195.00 363.00 558.00 OK
> <
> https://www.r-project.org/nosvn/R.check/r-release-windows-x86_64/geno2proteo-00check.html
> >
> r-oldrel-macos-arm64
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-oldrel-macos-arm64
> >
> 0.0.5 57.00 OK
> <
> https://www.r-project.org/nosvn/R.check/r-oldrel-macos-arm64/geno2proteo-00check.html
> >
> r-oldrel-macos-x86_64
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-oldrel-macos-x86_64
> >
> 0.0.5 84.00 OK
> <
> https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/geno2proteo-00check.html
> >
> r-oldrel-windows-ix86+x86_64
> <
> https://cran.r-project.org/web/checks/check_flavors.html#r-oldrel-windows-ix86_x86_64
> >
> 0.0.5 32.00 145.00 177.00 OK
> <
> https://www.r-project.org/nosvn/R.check/r-oldrel-windows-ix86+x86_64/geno2proteo-00check.html
> >
> Check
> Details
>
> Version: 0.0.5
> Check: Rd files
> Result: NOTE
>     checkRd: (-1) generatingCDSaaFile.Rd:23: Escaped LaTeX specials: \_ \_
>     checkRd: (-1) generatingCDSaaFile.Rd:72: Escaped LaTeX specials: \_
>
> Flavors: r-devel-linux-x86_64-debian-clang
> <
> https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/geno2proteo-00check.html
> >,
> r-devel-linux-x86_64-debian-gcc
> <
> https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/geno2proteo-00check.html
> >,
> r-devel-linux-x86_64-fedora-clang
> <
> https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/geno2proteo-00check.html
> >,
> r-devel-linux-x86_64-fedora-gcc
> <
> https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/geno2proteo-00check.html
> >,
> r-devel-windows-x86_64
> <
> https://www.r-project.org/nosvn/R.check/r-devel-windows-x86_64/geno2proteo-00check.html
> >
>
> ##########################################################################
>
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>
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