[R-pkg-devel] WinBuilder error: dependency version not available

[Carrie Tribble]

Dear Berry,

Thanks for your reply! I was away from my computer until now. We also
submitted to CRAN, but the dependency version is still causing an error:

package RevGadgets_1.0.0.tar.gz does not pass the incoming checks
> automatically, please see the following pre-tests:
> Windows: <
> https://win-builder.r-project.org/incoming_pretest/RevGadgets_1.0.0_20210805_041017/Windows/00check.log
> >
> Status: 1 ERROR, 1 NOTE
> Debian: <
> https://win-builder.r-project.org/incoming_pretest/RevGadgets_1.0.0_20210805_041017/Debian/00check.log
> >
> Status: 1 NOTE

Please fix all problems and resubmit a fixed version via the webform.
> If you are not sure how to fix the problems shown, please ask for help on
> the R-package-devel mailing list:
> <https://stat.ethz.ch/mailman/listinfo/r-package-devel>
> If you are fairly certain the rejection is a false positive, please
> reply-all to this message and explain.

More details are given in the directory:
> <
> https://win-builder.r-project.org/incoming_pretest/RevGadgets_1.0.0_20210805_041017/
> >
> The files will be removed after roughly 7 days.


The ERROR referenced is the same ggtree version error, and the Note is
simply that this is a first time CRAN submission. Is there any way that a
bioconductor package could be manually installed on WinBuilder? If so,
perhaps we could ask the dependency's maintainer to help us out and upload
the new version themselves. Other ideas would be very welcome --- we have a
deadline for getting the package on CRAN so waiting for the dependency to
be updated is not an ideal solution for us!

Thanks again for your help and suggestions!
Carrie

-------------------
Carrie M. Tribble, PhD <http://carrietribble.weebly.com/>
Postdoctoral Researcher in the Zenil-Ferguson Lab
<https://roszenil.github.io/>
University of Hawaiʻi at Mānoa



On Mon, Aug 9, 2021 at 1:20 PM Berry Boessenkool <
berryboessenkool using hotmail.com> wrote:

>
> If it works on all other testing platforms, I'd just submit to CRAN and
> see if it works.
> You may also just wait out until ggtree works on winbuilder...
>
> Regards,
> Berry
>
>
>
> ------------------------------
> *From:* R-package-devel <r-package-devel-bounces using r-project.org> on behalf
> of Carrie Tribble <ctribble09 using gmail.com>
> *Sent:* Friday, August 6, 2021 22:34
> *To:* r-package-devel using r-project.org <r-package-devel using r-project.org>
> *Subject:* [R-pkg-devel] WinBuilder error: dependency version not
> available
>
> I am in the final stages of preparing an R package
> <https://github.com/cmt2/RevGadgets/tree/development> to submit to CRAN.
> The package passes devtools::check() locally, GitHub Actions on multiple
> systems (including windows), devtools::check_rhub() remotely, and
> rhub::check_on_windows(check_args = "--force-multiarch"). However, it fails
> on WinBuilder.
>
> I'd appreciate any advice or suggestions. More details below:
>
> You can see the full WinBuilder log here:
>  https://win-builder.r-project.org/kTnuoY4Kqo8B/00check.log
> <https://win-builder.r-project.org/kTnuoY4Kqo8B/00check.log>
>
> * checking CRAN incoming feasibility ... NOTE
> > Maintainer: 'Carrie Tribble <ctribble09 using gmail.com>' New submission
> Possibly
> > misspelled words in DESCRIPTION:
> > RevBayes (3:45, 22:92)
> > * checking package namespace information ... OK
> > * checking package dependencies ... ERROR
> > Package required and available but unsuitable version: 'ggtree' See
> > section 'The DESCRIPTION file' in the 'Writing R Extensions'
> > manual.
> > * DONE
> > Status: 1 ERROR, 1 NOTE
>
>
> We require the latest version of ggtree, a bioconductor package.
> Unfortunately, this latest version is necessary for our package to
> function. What's the best way to get access to that version of ggtree on
> WinBuilder?
>
> You can see the log for the successful rhub check_on_windows run here:
>
> https://builder.r-hub.io/status/RevGadgets_1.0.0.tar.gz-8367c3a164ad47379c8bd89c81347ceb
> ,
> and find the package on GitHub here:
> https://github.com/cmt2/RevGadgets/tree/development.
>
> Thank you!
>
> -------------------
> Carrie M. Tribble, PhD <http://carrietribble.weebly.com/>
> Postdoctoral Researcher in the Zenil-Ferguson Lab
> <https://roszenil.github.io/>
> University of Hawaiʻi at Mānoa
>
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