[R-pkg-devel] Checking on Debian on RHub

[Gábor Csárdi]

Should be fixed in e4dd4d6c240407317abb67e156d99ef738a7e73c and
88718aad52df59b7e76c2db563991558a168b05e

I haven't yet tested it, though....

G.

On Thu, Apr 8, 2021 at 5:58 PM Roy Mendelssohn - NOAA Federal
<roy.mendelssohn using noaa.gov> wrote:
>
> My apologies, it is the Fedora instance.  Short version summary:
>
> Warning messages:
> 5558#> 1: In i.p(...) : installation of package ‘rgdal’ had non-zero exit status
> 5559#> 2: In i.p(...) : installation of package ‘sf’ had non-zero exit status
> 5560#> 3: In i.p(...) :
> 5561#> installation of package ‘plotdap’ had non-zero exit status
>
> 'plotdap' depends on sf which is why it fails.  Long version is at https://builder.r-hub.io/status/rerddapXtracto_1.1.0.tar.gz-f3facfb7e282436c98dce8b5014de474
>
> Thanks,
>
> -Roy
>
> > On Apr 8, 2021, at 7:35 AM, Roy Mendelssohn - NOAA Federal <roy.mendelssohn using noaa.gov> wrote:
> >
> > Thanks Gabor.  I will post more information later today when I get a chance.  I actually put something on issue tracker a year or two ago,  after posting here and having suggested that I raise an issue.
> >
> > I really appreciate the work going into RHub - the reason I am having this problem is I use RHub to check my submissions.  I just keep failing in my CRAN submissions on Debian while passing on Windows and Mac, sort of frustrating.
> >
> > -Roy
> >
> >> On Apr 8, 2021, at 12:22 AM, Gábor Csárdi <csardi.gabor using gmail.com> wrote:
> >>
> >> Hi,
> >>
> >> Which one is your package? Which spatial package fails? Can you link
> >> to an issue in the issue tracker, if there is one?
> >>
> >> As for an alternative, you can run a Docker container. This works on
> >> Linux, Windows and macOS, on any recent enough machine. You can run
> >> one of the R-hub containers, e.g.
> >> https://hub.docker.com/repository/docker/rhub/debian-gcc-devel and
> >> then try to fix the installation issue. Or you can try a bigger
> >> container that tries to mirror CRAN exactly:
> >> https://hub.docker.com/r/cran/debian
> >>
> >> Gabor
> >>
> >> On Thu, Apr 8, 2021 at 6:49 AM Roy Mendelssohn - NOAA Federal via
> >> R-package-devel <r-package-devel using r-project.org> wrote:
> >>>
> >>> Hi All:
> >>>
> >>> I still have problems with checking one of my packages on RHub running Debian,  as the Preprocessing fails in building in some of the needed spatial packages.  This problem was reported quite awhile ago,  and never appears to have been completely fixed.  Is there an alternate place I can test a package under Debian that is consistent with CRAN.
> >>>
> >>> Thanks,
> >>>
> >>> -Roy
> >>>
> >>> **********************
> >>> "The contents of this message do not reflect any position of the U.S. Government or NOAA."
> >>> **********************
> >>> Roy Mendelssohn
> >>> Supervisory Operations Research Analyst
> >>> NOAA/NMFS
> >>> Environmental Research Division
> >>> Southwest Fisheries Science Center
> >>> ***Note new street address***
> >>> 110 McAllister Way
> >>> Santa Cruz, CA 95060
> >>> Phone: (831)-420-3666
> >>> Fax: (831) 420-3980
> >>> e-mail: Roy.Mendelssohn using noaa.gov www: https://www.pfeg.noaa.gov/
> >>>
> >>> "Old age and treachery will overcome youth and skill."
> >>> "From those who have been given much, much will be expected"
> >>> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
> >>>
> >>> ______________________________________________
> >>> R-package-devel using r-project.org mailing list
> >>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >
> > **********************
> > "The contents of this message do not reflect any position of the U.S. Government or NOAA."
> > **********************
> > Roy Mendelssohn
> > Supervisory Operations Research Analyst
> > NOAA/NMFS
> > Environmental Research Division
> > Southwest Fisheries Science Center
> > ***Note new street address***
> > 110 McAllister Way
> > Santa Cruz, CA 95060
> > Phone: (831)-420-3666
> > Fax: (831) 420-3980
> > e-mail: Roy.Mendelssohn using noaa.gov www: https://www.pfeg.noaa.gov/
> >
> > "Old age and treachery will overcome youth and skill."
> > "From those who have been given much, much will be expected"
> > "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
> >
>
> **********************
> "The contents of this message do not reflect any position of the U.S. Government or NOAA."
> **********************
> Roy Mendelssohn
> Supervisory Operations Research Analyst
> NOAA/NMFS
> Environmental Research Division
> Southwest Fisheries Science Center
> ***Note new street address***
> 110 McAllister Way
> Santa Cruz, CA 95060
> Phone: (831)-420-3666
> Fax: (831) 420-3980
> e-mail: Roy.Mendelssohn using noaa.gov www: https://www.pfeg.noaa.gov/
>
> "Old age and treachery will overcome youth and skill."
> "From those who have been given much, much will be expected"
> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
>