[R-pkg-devel] unexpected CRAN pretest failure

[Rossum, Bart-Jan van]

I used that pre-compiled version indeed. I tried the latest version again this morning, it is now at r79645, and still all checks pass cleanly.

I also reran the r-hub and winbuilder checks this morning.
r-hub is at now at version r79633, the version where I first noted the issue with CRAN/winbuilder and it passes there as well.
However the issue is still present on winbuilder (r79643)

So still not able to reproduce the issue.

Best, Bart-Jan

-----Original Message-----
From: Joshua Ulrich <josh.m.ulrich using gmail.com> 
Sent: Thursday, December 17, 2020 18:07
To: Rossum, Bart-Jan van <bart-jan.vanrossum using wur.nl>
Cc: Uwe Ligges <ligges using statistik.tu-dortmund.de>; r-package-devel using r-project.org
Subject: Re: [R-pkg-devel] unexpected CRAN pretest failure

On Thu, Dec 17, 2020 at 7:25 AM Rossum, Bart-Jan van <bart-jan.vanrossum using wur.nl> wrote:
>
> Dear Uwe,
>
> Thanks for your reaction.
> I installed the latest available R-devel version (2020-12-15 r79633) on my own windows pc, but even then the checks pas cleanly.
> So, unfortunately I'm not able to reproduce the issue.
>
> To be sure, I also retried on Winbuilder, which has a slightly different version (r79643), but there the issue is still present.
>
> Could there be something else I need to do to be able to reproduce this locally?
>
I assume you used the pre-compiled version here:
https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fbin%2Fwindows%2Fbase%2Frdevel.html&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7Ccd5c0ba9587e4dcf87ce08d8a2ae3c33%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637438216965842718%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=JhNcdzrAauc3%2FyB84lVtVD4ySNXD4jEPhys9X2W%2Bb7k%3D&reserved=0

That version probably lags behind the subversion repo for about a day.
So you need to build the latest R-devel from the latest source in the subversion repo. It always has the latest version. Rocker and r-hub help make this much easier than setting everything up locally on your machine.

That said, it looks like the pre-compiled version is at r79643 now, so you should be able to use it to reproduce the issue.

Best,
Josh


> Regards,
> Bart-Jan
>
> -----Original Message-----
> From: Uwe Ligges <ligges using statistik.tu-dortmund.de>
> Sent: Thursday, December 17, 2020 13:29
> To: Rossum, Bart-Jan van <bart-jan.vanrossum using wur.nl>; 
> r-package-devel using r-project.org
> Subject: Re: [R-pkg-devel] unexpected CRAN pretest failure
>
> This is form a change in R-devel.
> Use a more recent R-devel to reproduce the issue.
>
> Best,
> Uwe Ligges
>
> On 14.12.2020 15:02, Rossum, Bart-Jan van wrote:
> > Dear community,
> >
> > When trying to update my CRAN (https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fweb%2Fpackages%2FstatgenGxE%2Findex.html&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7Ccd5c0ba9587e4dcf87ce08d8a2ae3c33%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637438216965842718%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=Ghvfz1vcqlGLz1mYUg3aITU6hqUqECpJArPe7z1gdFE%3D&reserved=0) package in ran into unexpected error on Windows.
> > I had tested before submission on R-hub, which went fine, but CRAN complained, and this was confirmed on Winbuilder.
> > I noticed a slight difference in R-version used on CRAN/Winbuilder and R-hub.
> > However, the error itself seems to come from an lme4 function.
> > I'm quite clueless on how to debug/fix this.
> >
> > CRAN and Winbuilder:
> > R Under development (unstable) (2020-12-13 r79623)
> > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwi
> > n-builder.r-project.org%2FnK0OMOQ378SI&data=04%7C01%7Cbart-jan.v
> > anrossum%40wur.nl%7Ccd5c0ba9587e4dcf87ce08d8a2ae3c33%7C27d137e5761f4
> > dc1af88d26430abb18f%7C0%7C0%7C637438216965842718%7CUnknown%7CTWFpbGZ
> > sb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0
> > %3D%7C3000&sdata=6gACwrgvakWrWl%2FqJ75sROVGJfA6TFn4iZvQ3usnW9A%3
> > D&reserved=0
> >
> > R-hub:
> > R Under development (unstable) (2020-11-30 r79529)
> > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbu
> > ilder.r-hub.io%2Fstatus%2FstatgenGxE_1.0.4.tar.gz-fcc1e205a5fb4fd095
> > 59d301ee3502c9&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7Ccd5c
> > 0ba9587e4dcf87ce08d8a2ae3c33%7C27d137e5761f4dc1af88d26430abb18f%7C0%
> > 7C0%7C637438216965852712%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDA
> > iLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=g0d
> > kXzaG%2BE03rh5uJc2baxPQYxTbVt3i0mmxCMF9FqI%3D&reserved=0
> >
> > Any pointers are appreciated,
> > Bart-Jan
> >
> > ______________________________________________
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