[R-pkg-devel] Run-times of examples in vignettes

Thierry Onkelinx th|erry@onke||nx @end|ng |rom |nbo@be
Tue Oct 27 18:50:10 CET 2020


My solution is similar to Ben's solution. Except that the code for creating
the data is in the vignette. The chunk only runs when the data is not
available. The trick is to pass code to the eval argument instead of a
fixed TRUE or FALSE. See
https://github.com/ropensci/git2rdata/blob/bad8a4cf42049faa72a04b202c5a4dfc233b4046/vignettes/efficiency.Rmd#L293
for an example.

ir. Thierry Onkelinx
Statisticus / Statistician

Vlaamse Overheid / Government of Flanders
INSTITUUT VOOR NATUUR- EN BOSONDERZOEK / RESEARCH INSTITUTE FOR NATURE AND
FOREST
Team Biometrie & Kwaliteitszorg / Team Biometrics & Quality Assurance
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Op di 27 okt. 2020 om 16:29 schreef Ben Bolker <bbolker using gmail.com>:

>
>    My general solution is to run time-consuming computations in advance
> and store the results in (e.g.) inst/vignette_data, whence they can be
> retrieved via system.file("vignette_data", "output.rda",
> package="my_pkg"). (I might also include the R script required to
> generate the file so that I could automatically re-make those outputs as
> required ...)
>
>
> On 10/27/20 8:53 AM, Helmut Schütz wrote:
> > Hi Dirk,
> >
> > Dirk Eddelbuettel wrote on 2020-10-27 13:32:
> >> | is there somewhere an official statement about the maximum run-times
> of
> >> | examples in vignettes?
> >>
> >> Seven minutes is excessive.
> >
> > Sure. The one vignette contains simulation code which needs 1E5 to 1E6
> > sims to get a stable result. Fewer sims are simply not meaningful.
> > Since we use a pre-complied vignette now the execution time is
> > essentially zero.
> > The others take 45 seconds in total.
> > If we would pre-compile the second slowest as well, we would be down for
> > the remaining four at 12 seconds.
> >
> >> I have (long) gone by the rule of "about one minute" each for tests
> >> and examples.
> >
> > OK. Do you know of any reference for this "rule"?
> >
> > Helmut
> >
>
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