[R-pkg-devel] [CRAN-pretest-archived] CRAN submission gwsem 2.0.3

[Joshua N Pritikin]

I'm trying to include vignettes that take much too long for CRAN check.

At the beginning of the Rmarkdown vignette, I use

  is_CRAN <- !identical(Sys.getenv("NOT_CRAN"), "true")
  if (is_CRAN) q()

And then I use

  export NOT_CRAN=true

when I build locally. But CRAN check still complains,

On Mon, Jun 08, 2020 at 04:24:43PM +0200, ligges using statistik.tu-dortmund.de wrote:
> Flavor: r-devel-linux-x86_64-debian-gcc
> Check: re-building of vignette outputs, Result: WARNING
>   Error(s) in re-building vignettes:
>     ...
>   --- re-building 'GeneEnvironmentInteraction.Rmd' using rmarkdown
>   --- re-building 'OneFactorModel.Rmd' using rmarkdown
>   --- re-building 'PostGWASprocessing.Rmd' using rmarkdown
>   --- re-building 'ResidualsModel.Rmd' using rmarkdown
>   --- re-building 'StandardGWAS.Rmd' using rmarkdown
>   --- re-building 'TwoFactorModel.Rmd' using rmarkdown
>   --- re-building 'UserSpecifiedGWASModels.Rmd' using rmarkdown
>   --- re-building 'growth.Rmd' using rmarkdown
>   Error: Vignette re-building failed.
>   Execution halted

What's the correct way to avoid CRAN complaints?

-- 
Joshua N. Pritikin, Ph.D.
Virginia Institute for Psychiatric and Behavioral Genetics
Virginia Commonwealth University
PO Box 980126
800 E Leigh St, Biotech One, Suite 1-133
Richmond, VA 23219
http://exuberant-island.surge.sh