[R-pkg-devel] Using Rcpp to set up a package
Dirk Eddelbuettel
edd @end|ng |rom deb|@n@org
Tue May 5 22:24:01 CEST 2020
Jim,
This is not the list for Rcpp discussions, as the package and its
documentation have been saying for a decade you should subscribe
to the rcpp-devel list.
Allow me to add one item:
On 5 May 2020 at 19:58, James Owen Ramsay, Dr. wrote:
| I’m working on max OS-X 10.15.3, using R 4.0.0, and updated Xcode as well as updated tools:
|
| Here’s my setup of a package called Data2LD2. (An update of an existing package Data2LD already on Iran):
|
| code_files = c("~/Documents/R/Data2LDRcpp/R/Atensorfn.R",
| "~/Documents/R/Data2LDRcpp/R/BAtensorfn.R",
| "~/Documents/R/Data2LDRcpp/R/Btensorfn.R",
| "~/Documents/R/Data2LDRcpp/R/checkModel.R",
| "~/Documents/R/Data2LDRcpp/R/Data2LD.opt.R",
| "~/Documents/R/Data2LDRcpp/R/Data2LD.R",
| "~/Documents/R/Data2LDRcpp/R/fun.explinear.R",
| "~/Documents/R/Data2LDRcpp/R/fun.Dexplinear.R",
| "~/Documents/R/Data2LDRcpp/R/getForceterm.R",
| "~/Documents/R/Data2LDRcpp/R/getHomoTerm.R",
| "~/Documents/R/Data2LDRcpp/R/inprod.TPbasis.R",
| "~/Documents/R/Data2LDRcpp/R/make.Fterm.R",
| "~/Documents/R/Data2LDRcpp/R/make.Xterm.R",
| "~/Documents/R/Data2LDRcpp/R/make.Variable.R",
| "~/Documents/R/Data2LDRcpp/R/modelList2Vec.R",
| "~/Documents/R/Data2LDRcpp/R/modelVec2List.R",
| "~/Documents/R/Data2LDRcpp/R/printMatrix.R",
| "~/Documents/R/Data2LDRcpp/R/printModel.R")
|
| cpp_files = c("~/Documents/R/Data2LDRcpp/src/DASarrayFnCpp",
| "~/Documents/R/Data2LDRcpp/src/DBSarrayFnCpp",
| "~/Documents/R/Data2LDRcpp/src/DRarrayFnCpp",
| "~/Documents/R/Data2LDRcpp/src/loopJuanCpp",
| "~/Documents/R/Data2LDRcpp/src/RmatFnCpp",
| "~/Documents/R/Data2LDRcpp/src/SmatFnCpp")
|
| Rcpp.package.skeleton(name="Data2LD2",
| code_files=code_files,
| cpp_files =cpp_files,
| author="James Ramsay",
| maintainer="James Ramsay",
| force=TRUE)
I have created many packages using Rcpp.package.skeleton(), but I usually do
NOT supply lists of files. I would consider starting with an empty package,
and adding files as you go along. For a deeper look it usually helps us most
to actually _see_ the code so if it is in public repo, tell us.
| Here’s the bad news from R CMD check:
|
| Error: package or namespace load failed for ‘Data2LD2’ in dyn.load(file, DLLpath = DLLpath, ...):
| unable to load shared object '/Users/jimramsay/Documents/R/Data2LD2.Rcheck/00LOCK-Data2LD2/00new/Data2LD2/libs/Data2LD2.so':
| dlopen(/Users/jimramsay/Documents/R/Data2LD2.Rcheck/00LOCK-Data2LD2/00new/Data2LD2/libs/Data2LD2.so, 6): Symbol not found: _DASarrayFnCpp
| Referenced from: /Users/jimramsay/Documents/R/Data2LD2.Rcheck/00LOCK-Data2LD2/00new/Data2LD2/libs/Data2LD2.so
| Expected in: flat namespace
We've seen that error but I don't recall from the top of my head where this
leads.
Overall, I would expect this to be simple to fix. Let's lay out the files as
expect, let's run `compileAttributes()` (if you use Rcpp Attributes as one
should) and let's take it from there.
But let's maybe have that discussion over at rcpp-devel.
Best, Dirk
| in /Users/jimramsay/Documents/R/Data2LD2.Rcheck/00LOCK-Data2LD2/00new/Data2LD2/libs/Data2LD2.so
| Error: loading failed
| Execution halted
| ERROR: loading failed
| * removing ‘/Users/jimramsay/Documents/R/Data2LD2.Rcheck/Data2LD2’
|
| I’m getting this failure after many iterations of this setup, this being the simplest and most direct that I know.
|
| Sure would like some help (or some sympathy at least)
|
| Jim Ramsay
| ______________________________________________
| R-package-devel using r-project.org mailing list
| https://stat.ethz.ch/mailman/listinfo/r-package-devel
--
http://dirk.eddelbuettel.com | @eddelbuettel | edd using debian.org
More information about the R-package-devel
mailing list