[R-pkg-devel] Errors in make check in Windows 10 with OpenBLAS

Fri Mar 20 05:44:39 CET 2020

Hi Tomas and others:

Here is the session Info.  I also used the str example both without and
with changing the locale.

 sI <- sessionInfo()
> str(sI)
List of 10
 $ R.version :List of 14
  ..$ platform      : chr "x86_64-w64-mingw32"
  ..$ arch          : chr "x86_64"
  ..$ os            : chr "mingw32"
  ..$ system        : chr "x86_64, mingw32"
  ..$ status        : chr ""
  ..$ major         : chr "3"
  ..$ minor         : chr "6.3"
  ..$ year          : chr "2020"
  ..$ month         : chr "02"
  ..$ day           : chr "29"
  ..$ svn rev       : chr "77875"
  ..$ language      : chr "R"
  ..$ version.string: chr "R version 3.6.3 (2020-02-29)"
  ..$ nickname      : chr "Holding the Windsock"
 $ platform  : chr "x86_64-w64-mingw32/x64 (64-bit)"
 $ locale    : chr "LC_COLLATE=English_United
States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United
States.125"| __truncated__
 $ running   : chr "Windows 10 x64 (build 18362)"
 $ RNGkind   : chr [1:3] "Mersenne-Twister" "Inversion" "Rejection"
 $ basePkgs  : chr [1:7] "stats" "graphics" "grDevices" "utils" ...
 $ loadedOnly:List of 1
  ..$ compiler:List of 9
  .. ..$ Package    : chr "compiler"
  .. ..$ Version    : chr "3.6.3"
  .. ..$ Priority   : chr "base"
  .. ..$ Title      : chr "The R Compiler Package"
  .. ..$ Author     : chr "Luke Tierney <luke-tierney using uiowa.edu>"
  .. ..$ Maintainer : chr "R Core Team <R-core using r-project.org>"
  .. ..$ Description: chr "Byte code compiler for R."
  .. ..$ License    : chr "Part of R 3.6.3"
  .. ..$ Built      : chr "R 3.6.3; ; 2020-03-20 04:29:00 UTC; windows"
  .. ..- attr(*, "class")= chr "packageDescription"
  .. ..- attr(*, "file")= chr
"c:/newtimeR/R-3.6.3/library/compiler/Meta/package.rds"
 $ matprod   : chr "default"
 $ BLAS      : chr ""
 $ LAPACK    : chr ""
 - attr(*, "class")= chr "sessionInfo"

Running the str example WITHOUT changing the locale:
> ## Truncation behavior (<-> correct width measurement) for "long"
non-ASCII:
> idx <- c(65313:65338, 65345:65350)
> fwch <- intToUtf8(idx) # full width character string: each has width 2
> ch <- strtrim(paste(LETTERS, collapse="._"), 64)
> (ncc <- c(c.ch = nchar(ch),   w.ch = nchar(ch,   "w"),
+           c.fw = nchar(fwch), w.fw = nchar(fwch, "w")))
c.ch w.ch c.fw w.fw
  64   64   32   64
> stopifnot(unname(ncc) == c(64,64, 32, 64))
> ## nchar.max: 1st line needs an increase of  2  in order to see  1  (in
UTF-$
> invisible(lapply(60:66, function(N) str(fwch, nchar.max = N)))
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+"| __truncated__
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+F"| __truncated__
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF"| __truncated__
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF2"| __truncated__
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF26"| __truncated__
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF26>"| __truncated__
 chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF26><"| __truncated__
> invisible(lapply(60:66, function(N) str( ch , nchar.max = N))) # "1 is 1"
he$
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O."| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P."| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P._"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P._Q._R._S._T._U._V"
>

Running the str example WITH changing the locale:

 oloc <- Sys.getlocale("LC_CTYPE")
> mbyte.lc <- if(.Platform$OS.type == "windows")
+  "English_United States.28605" else "en_GB.UTF-8"
> try(Sys.setlocale("LC_CTYPE", mbyte.lc))
[1] "English_United States.28605"
> ## Truncation behavior (<-> correct width measurement) for "long"
non-ASCII:
> idx <- c(65313:65338, 65345:65350)
> fwch <- intToUtf8(idx) # full width character string: each has width 2
> ch <- strtrim(paste(LETTERS, collapse="._"), 64)
> (ncc <- c(c.ch = nchar(ch),   w.ch = nchar(ch,   "w"),
+           c.fw = nchar(fwch), w.fw = nchar(fwch, "w")))
c.ch w.ch c.fw w.fw
  64   64   32   64
> stopifnot(unname(ncc) == c(64,64, 32, 64))
> ## nchar.max: 1st line needs an increase of  2  in order to see  1  (in
UTF-$
> invisible(lapply(60:66, function(N) str(fwch, nchar.max = N)))
Error in strtrim(x.lrg, nchar.max - nc) :
  unsupported conversion from 'UTF-8' in codepage 28605
> invisible(lapply(60:66, function(N) str( ch , nchar.max = N))) # "1 is 1"
he$
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O."| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P."| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P._"| __truncated__
 chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P._Q._R._S._T._U._V"

This is pretty strange.

Thanks for any help.

Sincerely,
Erin

Erin Hodgess, PhD
mailto: erinm.hodgess using gmail.com

On Thu, Mar 19, 2020 at 2:29 AM Tomas Kalibera <tomas.kalibera using gmail.com>
wrote:

> Hi Erin,
>
> this comes from examples in ?str. Could you please try to find a minimal
> example to reproduce on your system based on that? I would look for
> "line needs" in ?str and experiment with reducing the example there
> while still getting the error. Once it is minimal, could you please try
> also on the official build of R on your machine?
>
> Also it would be nice to have a session info. If it works in the
> official build but not your custom build, then one would have to look
> also into how the custom build is done.
>
> Thanks
> Tomas
>
>
> On 3/19/20 8:02 AM, Erin Hodgess wrote:
> > Hello everyone:
> >
> > I have built the latest version of the OpenBLAS on my Windows 10 machine.
> > When I run make distribution in R, everything is fine.
> >
> > However, when I run make check all,  I get the following error:
> >
> > C:\newtimeR\R-3.6.3\src\gnuwin32>make check-all
> > Testing examples for package 'base'
> > Testing examples for package 'tools'
> >    comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
> > Testing examples for package 'utils'
> > Error: testing 'utils' failed
> > Execution halted
> > make[3]: *** [Makefile.win:29: test-Examples-Base] Error 1
> > make[2]: *** [Makefile.common:185: test-Examples] Error 2
> > make[1]: *** [Makefile.common:171: test-all-basics] Error 1
> > make: *** [Makefile:324: check-all] Error 2
> >
> > And here is the section from the .Rout.fail for utils:
> >
> >> ## Multibyte characters in strings (in multibyte locales):
> >> oloc <- Sys.getlocale("LC_CTYPE")
> >> mbyte.lc <- if(.Platform$OS.type == "windows")
> > +  "English_United States.28605" else "en_GB.UTF-8"
> >> try(Sys.setlocale("LC_CTYPE", mbyte.lc))
> > [1] "English_United States.28605"
> >> ## Truncation behavior (<-> correct width measurement) for "long"
> > non-ASCII:
> >> idx <- c(65313:65338, 65345:65350)
> >> fwch <- intToUtf8(idx) # full width character string: each has width 2
> >> ch <- strtrim(paste(LETTERS, collapse="._"), 64)
> >> (ncc <- c(c.ch = nchar(ch),   w.ch = nchar(ch,   "w"),
> > +           c.fw = nchar(fwch), w.fw = nchar(fwch, "w")))
> > c.ch w.ch c.fw w.fw
> >    64   64   32   64
> >> stopifnot(unname(ncc) == c(64,64, 32, 64))
> >> ## nchar.max: 1st line needs an increase of  2  in order to see  1  (in
> > UTF-8!):
> >> invisible(lapply(60:66, function(N) str(fwch, nchar.max = N)))
> > Error in strtrim(x.lrg, nchar.max - nc) :
> >    unsupported conversion from 'UTF-8' in codepage 28605
> > Calls: lapply ... FUN -> str -> str.default -> maybe_truncate -> strtrim
> > Execution halted
> >
> > Has anyone run into this before, please?
> >
> > If I run this line-by-line starting at the "idx <-", things are fine.
> >
> > I also compiled R from source without the OpenBLAS, and it was fine.
> >
> > Thanks for any suggestions.
> >
> > Sincerely,
> > Erin
> >
> >
> >
> > Erin Hodgess, PhD
> > mailto: erinm.hodgess using gmail.com
> >
> >       [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-package-devel using r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
>
>

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