[R-pkg-devel] parglm: Package pulled of CRAN
Benjamin Christoffersen
boennecd @end|ng |rom gm@||@com
Fri Mar 13 17:55:50 CET 2020
Dear Sirs,
Recently, my parglm package was pulled of CRAN because of a segfault
on Solaris and an issue on the OpenBLAS additional issues test.
I started with the Solaris issue but failed to reproduce the error
with `rhub::checkonsolaris()`. Then I tried to reproduce the OpenBLAS.
First, I build R-devel with
`–with-blas="/usr/lib/x86_64-linux-gnu/openblas/libblas.so.3"` and
`–with-lapack="/usr/lib/x86_64-linux-gnu/openblas/liblapack.so.3"`
which one gets from `libopenblas-dev` if I recall correctly on my own
Ubuntu machine (version 18.04, gcc 8.3.0). However, there where no
issues or segfaults when I ran `CMD check –as-cran
–no-stop-on-test-error`.
Then I build the following docker image:
https://gist.github.com/boennecd/fd0625daf11aae3304e9e9a9a6cfea7d
where I do as described in the following two links (I think):
https://www.stats.ox.ac.uk/pub/bdr/Rblas/README.txt &
https://www.stats.ox.ac.uk/pub/bdr/Rconfig/r-devel-linux-x8664-fedora-gcc
However when I started the container and ran:
- `/opt/R-devel/lib64/R/bin/R CMD check –as-cran
–no-stop-on-test-error –use-valgrind`
- `/opt/R-devel/lib64/R/bin/R CMD check –as-cran –no-stop-on-test-error`
then I got no issues or segfaults.
So, although that other people have asked similar questions before,
can anyone spot what I did wrong when I tried to reproduce the error
and if not what should I do? Any help is much appreciated.
There are no other issues with both ASAN and UBSAN checks with gcc and
clang on my own machine.
Sincerely Yours,
Benjamin Christoffersen
More information about the R-package-devel
mailing list