[R-pkg-devel] vignette error in debian

[Fernando Roa]

After Ege answer, I could replicate the error(s): list' object cannot be
coerced to type 'double'
with CMD check: bash R-devel.sh CMD check --as-cran
idiogramFISH_1.9.1.tar.gz  in a vmware
debian guest with the r-devel (4.0) version of R installed after:
http://singmann.org/installing-r-devel-on-linux/

Error does not occur in a R-devel console session installed
in /usr/local/lib/R-devel/bin

After adding debug prints to the code, problem points to a mapply

Here are the values I got with debug printing

labelytoplot<-list(c(0.654545454545455, 0.654545454545455,
0.763636363636364, 0.763636363636364), c(0.872727272727273,
0.872727272727273, 0.981818181818182, 0.981818181818182),
c(1.09090909090909, 1.09090909090909, 1.2, 1.2), c(1.30909090909091,
1.30909090909091, 1.41818181818182, 1.41818181818182))
labelxtoplot<-list(c(42.5, 44.75, 44.75, 42.5), c(42.5, 44.75, 44.75,
42.5), c(42.5, 44.75, 44.75, 42.5), c(42.5, 44.75, 44.75, 42.5))
borders<-marks<-c("green","blue","yellow","black")

CODE producing the error in R CMD check only:
# plot(1:50)
mapply(function(x,y,z,w) graphics::polygon(x=x,
                                           y=y,
                                           col=z,
                                           lwd=rep(.5,length(marks) )
                                           ,border=w
),
x = labelxtoplot,
y = labelytoplot
,z = marks
,w = borders
)

Grateful for any guidance ,






On Wed, Nov 27, 2019 at 8:34 AM Ege Rubak <rubak using math.aau.dk> wrote:

> On 27/11/2019 00.22, Fernando Roa wrote:
> > - I used a guest debian 10 in vmware in my system, and couldn't replicate
> > the error installing with R CMD INSTALL ....
>
> I guess you should rather run "R CMD check ..." on the tar.gz file to
> reproduce the error.
>
> Hope that helps.
>
> /Ege
>
> ______________________________________________
> R-package-devel using r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel


Original message:
I got a warning only in debian after submitting package to CRAN.
I want to replicate the vignette warning of debian in the following link to
solve it:

Debian:
https://win-builder.r-project.org/incoming_pretest/idiogramFISH_1.9.1_20191126_012524/Debian/00check.log
1 WARNING

Warning summary:
"checking re-building of vignette outputs ... [15s/17s] WARNING
Error(s) in re-building vignettes:
'list' object cannot be coerced to type 'double'" several times
--

- I used a guest debian 10 in vmware in my system, and couldn't replicate
the error installing with R CMD INSTALL ....

- In R of host, I installed rhub and run
rhub::check_with_sanitizers() # success
rhub::check_on_debian() # does not work because of vignette dependencies
not installed
rhub::check(platform = "debian-gcc-devel") # does not work because of
vignette dependencies not installed

https://pastebin.com/wwhbqcSw

Grateful for any guidance


-- 
Fernando Roa

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