[R-pkg-devel] Re :Re: Re :Re: Re :Re: Re :Re: package cartog
Duncan Murdoch
murdoch@dunc@n @end|ng |rom gm@||@com
Sun Apr 7 21:34:39 CEST 2019
On 07/04/2019 3:24 p.m., cartograflow using gmail.com wrote:
> I put other.other using gmail.com <mailto:other.other using gmail.com> because I
> don't show the name of the person.
> But when I've made the check I've put the good name.
I hope you realize that if your package is accepted on CRAN, the full
authorship list will be released to everyone. Hiding it now seems a
little counter-productive, in that it produced an obvious problem that
isn't there in the real package.
Duncan Murdoch
>
> Envoyé depuis Yahoo Mail pour Android
> <https://go.onelink.me/107872968?pid=InProduct&c=Global_Internal_YGrowth_AndroidEmailSig__AndroidUsers&af_wl=ym&af_sub1=Internal&af_sub2=Global_YGrowth&af_sub3=EmailSignature>
>
> Le dim., avr. 7, 2019 à 21:10, Jeff Newmiller
> <jdnewmil using dcn.davis.ca.us> a écrit :
> don't you think is inappropriate?
>
> On April 7, 2019 12:01:59 PM PDT, "cartograflow using gmail.com
> <mailto:cartograflow using gmail.com>" <cartograflow using gmail.com
> <mailto:cartograflow using gmail.com>> wrote:
> >Thanks!So, I've already check and I didn't see the descrption of the
> >note in 00check.log.The only thing I can say is that there's a problem
> >with Author.
> >I tried to put Authors using R <mailto:Authors using R> and it also generates
> notes.
> >Do you have any idea?
> >
> >You will find hereafter the copy of the file 00check.log.Thanks in
> >advance
> >----------------* using log directory
> >‘/home/sylvain/svn/cartograflow.Rcheck’
> >* using R Under development (unstable) (2019-04-04 r76316)
> >* using platform: x86_64-pc-linux-gnu (64-bit)
> >* using session charset: UTF-8
> >* using option ‘--as-cran’
> >* checking for file ‘cartograflow/DESCRIPTION’ ... OK
> >* this is package ‘cartograflow’ version ‘1.0.0.0’
> >* package encoding: UTF-8
> >* checking CRAN incoming feasibility ... NOTE
> >Maintainer: ‘Sylvain Blondeau <blondeau.sylvain using yahoo.fr
> <mailto:blondeau.sylvain using yahoo.fr>>’
> >
> >New submission
> >
> >Author field should be Authors using R. <mailto:Authors using R.> Current
> value is:
> > c(person("Sylvain", "Blondeau", email =
> "blondeau.sylvain using yahoo.fr <mailto:blondeau.sylvain using yahoo.fr>",
> >role = c("cre","aut")),
> > person("other", "other", email =
> "other.other using gmail.com <mailto:other.other using gmail.com>",
> >role = c("aut")))
> >* checking package namespace information ... OK
> >* checking package dependencies ... OK
> >* checking if this is a source package ... OK
> >* checking if there is a namespace ... OK
> >* checking for executable files ... OK
> >* checking for hidden files and directories ... OK
> >* checking for portable file names ... OK
> >* checking for sufficient/correct file permissions ... OK
> >* checking serialization versions ... OK
> >* checking whether package ‘cartograflow’ can be installed ... OK
> >* checking installed package size ... OK
> >* checking package directory ... OK
> >* checking for future file timestamps ... OK
> >* checking ‘build’ directory ... OK
> >* checking DESCRIPTION meta-information ... OK
> >* checking top-level files ... OK
> >* checking for left-over files ... OK
> >* checking index information ... OK
> >* checking package subdirectories ... OK
> >* checking R files for non-ASCII characters ... OK
> >* checking R files for syntax errors ... OK
> >* checking whether the package can be loaded ... OK
> >* checking whether the package can be loaded with stated dependencies
> >... OK
> >* checking whether the package can be unloaded cleanly ... OK
> >* checking whether the namespace can be loaded with stated
> dependencies
> >... OK
> >* checking whether the namespace can be unloaded cleanly ... OK
> >* checking use of S3 registration ... OK
> >* checking dependencies in R code ... OK
> >* checking S3 generic/method consistency ... OK
> >* checking replacement functions ... OK
> >* checking foreign function calls ... OK
> >* checking R code for possible problems ... OK
> >* checking Rd files ... OK
> >* checking Rd metadata ... OK
> >* checking Rd line widths ... OK
> >* checking Rd cross-references ... OK
> >* checking for missing documentation entries ... OK
> >* checking for code/documentation mismatches ... OK
> >* checking Rd \usage sections ... OK
> >* checking Rd contents ... OK
> >* checking for unstated dependencies in examples ... OK
> >* checking installed files from ‘inst/doc’ ... OK
> >* checking files in ‘vignettes’ ... OK
> >* checking examples ... OK
> >* checking for unstated dependencies in ‘tests’ ... OK
> >* checking tests ... OK
> > Running ‘testthat.R’
> >* checking for unstated dependencies in vignettes ... OK
> >* checking package vignettes in ‘inst/doc’ ... OK
> >* checking re-building of vignette outputs ... OK
> >* checking PDF version of manual ... OK
> >* DONE
> >Status: 1 NOTE
> >
> >
> >Le dimanche 7 avril 2019 à 18:22:32 UTC+2, Duncan Murdoch
> ><murdoch.duncan using gmail.com <mailto:murdoch.duncan using gmail.com>> a
> écrit :
> >
> > On 07/04/2019 12:16 p.m., cartograflow using gmail.com
> <mailto:cartograflow using gmail.com> wrote:
> >> Hi,Thanks to your reply and your information. Right now it stays
> only
> >one note when I've made R-devel CMD CHECK --as-cran. So, I didn't
> >identified this note in repertory R.check. What's file I've to
> >check?I'd like to know if I can new submission in CRAN with one
> >note. Sylvain
> >
> >It will be in cartograflow.Rcheck/00check.log.
> >
> >Duncan Murdoch
> >
> >>
> >>
> >>
> >> Envoyé depuis Yahoo Mail pour Android
> >>
> >> Le jeu., avr. 4, 2019 à 17:09, Maëlle
> >SALMON<maelle.salmon using yahoo.se <mailto:maelle.salmon using yahoo.se>> a
> écrit : I'd recommend reading
> >https://r-pkgs.org/description.html#dependencies (and the rest of the
> >book is very good as well), it'll help you understand why and how to
> >declare dependencies.
> >>
> >>
> >>
> >>
> >> Den torsdag 4 april 2019 17:05:02 CEST,
> cartograflow using gmail.com <mailto:cartograflow using gmail.com>
> ><cartograflow using gmail.com <mailto:cartograflow using gmail.com>> skrev:
> >>
> >> How I can declare the dependencies in DESCRIPTION file?
> >> depends: library(dplyr,dependencies =TRUE)
> >> Thanks
> >> Envoyé depuis Yahoo Mail pour Android
> >>
> >> Le jeu., avr. 4, 2019 à 14:42, Uwe
> >Ligges<ligges using statistik.tu-dortmund.de
> <mailto:ligges using statistik.tu-dortmund.de>> a écrit : .... or forgot to
> >declare a dependency on that package in the
> >> DESCRIPTION file...
> >>
> >> Best,
> >> Uwe Ligges
> >>
> >> On 04.04.2019 13:34, Sebastian Meyer wrote:
> >>> There are probably no clairvoyants around here. So, again, without
> >>> access to the up-to-date source code of your package, nobody
> will be
> >>> able to help.
> >>>
> >>> "there is no package called ..." means that the given package
> is not
> >>> installed in any of the libraries currently in use by R (see
> >.libPaths()
> >>> for the relevant paths). Maybe you have installed "dplyr" in a
> >library
> >>> used by your standard R installation, but not in any library
> used by
> >>> your R-devel installation (which you seem to use for checking the
> >>> package)? Just a wild guess.
> >>>
> >>>
> >>> Am 04.04.19 um 13:14 schrieb cartograflow using gmail.com
> <mailto:cartograflow using gmail.com>:
> >>>> I follow up your recommendation and for the moment I didn't used
> >>>> "conflicted".
> >>>>
> >>>> So, I've made the nex R CMD check and I have the problem
> >>>> Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck =
> >>>> vI[[i]]) :
> >>>> there is no package called ‘dplyr’
> >>>>
> >>>> How I can solve this issue?
> >>>>
> >>>> Thanks in advance
> >>>>
> >>>> Le jeudi 4 avril 2019 à 08:22:26 UTC+2, Sebastian Meyer
> >>>> <seb.meyer using fau.de <mailto:seb.meyer using fau.de>> a écrit :
> >>>>
> >>>>
> >>>> Note that output concerning masked objects are just messages which
> >do
> >>>> not cause your vignette to fail. So it is not stricly necessary to
> >start
> >>>> working on these conflicts now.
> >>>>
> >>>> However, looking closely at the win-builder check results
> >>>>
> >(https://win-builder.r-project.org/incoming_pretest/cartograflow_0.0.0.9000_20190324_230822/Windows/00check.log),
> >>>> I see the following output below these messages
> >>>>
> >>>>> Warning in eval(expr, envir, enclos) : NAs introduced by coercion
> >>>>> Quitting from lines 529-573 (cartograflow.Rmd)
> >>>>> Error: processing vignette 'cartograflow.Rmd' failed with
> >diagnostics:
> >>>>> argument is of length zero
> >>>>
> >>>> So the problem actually is in lines 529-573 of the
> cartograflow.Rmd
> >>>> vignette (at least in the version submitted to win-builder a few
> >weeks ago).
> >>>>
> >>>> Running tools::buildVignette("cartograflow.Rmd") locally, I see
> >>>>
> >>>>> Error in if (horiz) { : argument is of length zero
> >>>>
> >>>> and the subsequent traceback() shows that the error originates
> from
> >>>>
> >>>>> layoutLayer(title = "Professional mobility in Greater Paris",
> >>>>> coltitle = "black", author = "Cartograflow, 2019",
> >sources =
> >>>> "Sources : data : INSEE, RP, MOBPRO, 2017 ; basemap : IGN, APUR,
> >UMS
> >>>> 2414 RIATE, 2018.",
> >>>>> scale = 0.2, tabtitle = TRUE, frame = TRUE,
> north(pos =
> >>>> "topright"),
> >>>>> col = "grey")
> >>>>
> >>>> So it seems to me that the unnamed argument 'north(pos =
> >"topright")' is
> >>>> wrongly matched to the "horiz" argument of layoutLayer().
> >>>>
> >>>> Cheers,
> >>>>
> >>>> Sebastian
> >>>>
> >>>>
> >>>> Am 04.04.19 um 07:20 schrieb cartograflow using gmail.com
> <mailto:cartograflow using gmail.com>
> >>>> <mailto:cartograflow using gmail.com <mailto:cartograflow using gmail.com>>:
> >>>>>
> >>>>> Hi,I don't know if my explanations are clear.I tried several way
> >to
> >>>> solve this problem w/o success. Someone have an idea ?Thanks in
> >advance
> >>>>>
> >>>>> On 2019-04-03 2:11 p.m., cartograflow using gmail.com
> <mailto:cartograflow using gmail.com>
> >>>> <mailto:cartograflow using gmail.com
> <mailto:cartograflow using gmail.com>> wrote:
> >>>>>> Hi,
> >>>>>>
> >>>>>> I come back to you because I have always the problem with
> >>>> devtools::check of my package.
> >>>>>>
> >>>>>> I used the command to check my package with R-devel :
> >>>>>> sylvain using sylvain <mailto:sylvain using sylvain>
> <mailto:sylvain using sylvain <mailto:sylvain using sylvain>>:~/svn$ bash R-devel.sh
> >CMD
> >>>> check --as-cran
> >>>> /home/sylvain/work/12_R_studio/package/cartograflow_0.0.0.1.tar.gz
> >>>>>>
> >>>>>> When I start the rmd file there is a warning due to package
> dplyr
> >:
> >>>>>> Attaching package: 'dplyr'
> >>>>>> The following objects are masked from
> 'package:stats':
> >>>>>> filter, lag
> >>>>>> The following objects are masked from 'package:base':
> >>>>>> intersect, setdiff, setequal, union
> >>>>>>
> >>>>>> The solve this issue I added in rmd file, description file and
> >the
> >>>> namespace the package conflicted.
> >>>>>> So, the package conflicted avoid to have this warning.
> >>>>>>
> >>>>>> But when I run R-devel CMD check I have a new issue that is
> Error
> >in
> >>>> loadNamespace...no package called ‘conflicted’ (see below)
> >>>>>>
> >>>>>> Can you help me to solve this issue if tit's possible?
> >>>>>> Thanks in advance to your help !
> >>>>>> Sylvain
> >>>>>> -----------------
> >>>>>> Below extract of 00check.log
> >>>>>> * checking whether package ‘cartograflow’ can be installed ...
> >ERROR
> >>>>>> Installation failed.
> >>>>>> See ‘/home/sylvain/svn/cartograflow.Rcheck/00install.out’ for
> >details.
> >>>>>> * DONE
> >>>>>> Status: 1 ERROR, 1 NOTE
> >>>>>>
> >>>>>> Below 00install.out
> >>>>>> * installing *source* package ‘cartograflow’ ...
> >>>>>> ** using staged installation
> >>>>>> ** R
> >>>>>> ** inst
> >>>>>> ** byte-compile and prepare package for lazy loading
> >>>>>> Error in loadNamespace(i, c(lib.loc, .libPaths()),
> versionCheck =
> >>>> vI[[i]]) :
> >>>>>> there is no package called ‘conflicted’
> >>>>>> Calls: <Anonymous> ... loadNamespace -> withRestarts ->
> >>>> withOneRestart -> doWithOneRestart
> >>>>>> Exécution arrêtée
> >>>>>> ERROR: lazy loading failed for package ‘cartograflow’
> >>>>>> * removing ‘/home/sylvain/svn/cartograflow.Rcheck/cartograflow’
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> Le mardi 26 mars 2019 à 22:42:21 UTC+1, Henrik Bengtsson
> >>>> <henrik.bengtsson using gmail.com
> <mailto:henrik.bengtsson using gmail.com>
> <mailto:henrik.bengtsson using gmail.com
> <mailto:henrik.bengtsson using gmail.com>>> a
> >écrit :
> >>>>>>
> >>>>>> FWIW, you should be able to reproduce at least the
> following
> >NOTEs
> >>>>>> with your current R 3.5.2 and R CMD check --as-cran:
> >>>>>>
> >>>>>> * checking CRAN incoming feasibility ... NOTE
> >>>>>> Maintainer: ‘cartogRaflow <cartograflow using gmail.com
> <mailto:cartograflow using gmail.com>
> >>>> <mailto:cartograflow using gmail.com <mailto:cartograflow using gmail.com>>>’
> >>>>>>
> >>>>>> New submission
> >>>>>>
> >>>>>> Version contains large components (0.0.0.9000)
> >>>>>>
> >>>>>> Possibly mis-spelled words in DESCRIPTION:
> >>>>>> flowmapping (7:41)
> >>>>>>
> >>>>>> Author field should be Authors using R. <mailto:Authors using R.>
> <mailto:Authors using R. <mailto:Authors using R.>> Current
> >value is:
> >>>>>> c(person("Françoise", "Bahoken", email =
> >>>>>> "francoise.bahoken using ifsttar.fr
> <mailto:francoise.bahoken using ifsttar.fr>
> ><mailto:francoise.bahoken using ifsttar.fr
> <mailto:francoise.bahoken using ifsttar.fr>>",
> >>>> role = c("cre","aut")),
> >>>>>> person("Sylvain", "Blondeau", email =
> >>>>>> "blondeau.sylvain using yahoo.fr
> <mailto:blondeau.sylvain using yahoo.fr> <mailto:blondeau.sylvain using yahoo.fr
> <mailto:blondeau.sylvain using yahoo.fr>>",
> >role
> >>>> = c("aut"))
> >>>>>>
> >>>>>> The Title field should be in title case. Current version is:
> >>>>>> ‘thematic cartography of flows and movements’
> >>>>>> In title case that is:
> >>>>>> ‘Thematic Cartography of Flows and Movements’
> >>>>>>
> >>>>>> Those are all classical mistakes ("we've all been there"). The
> >>>>>> vignette errors may or may not be specific to R devel.
> >>>>>>
> >>>>>> /Henrik
> >>>>>>
> >>>>>> On Tue, Mar 26, 2019 at 2:29 PM cartograflow using gmail.com
> <mailto:cartograflow using gmail.com>
> >>>> <mailto:cartograflow using gmail.com <mailto:cartograflow using gmail.com>>
> >>>>>> <cartograflow using gmail.com <mailto:cartograflow using gmail.com>
> <mailto:cartograflow using gmail.com <mailto:cartograflow using gmail.com>>> wrote:
> >>>>>>>
> >>>>>>> Hi, l've made R CMD check --as-cran on rstudio 3.5.2Why I have
> >to
> >>>> use r-devel?
> >>>>>>> I confirm that I didn't received à error message when I've made
> >>>> dev_tool::check.
> >>>>>>> How can I solve my problem ?
> >>>>>>> Thanks in advance Sylvain
> >>>>>>>
> >>>>>>>
> >>>>>>> nvoyé depuis Yahoo Mail pour Android
> >>>>>>>
> >>>>>>> Le lun., mars 25, 2019 à 23:38, Uwe
> >>>> Ligges<ligges using statistik.tu-dortmund.de
> <mailto:ligges using statistik.tu-dortmund.de>
> >>>> <mailto:ligges using statistik.tu-dortmund.de
> <mailto:ligges using statistik.tu-dortmund.de>>> a écrit : I cannot
> >beloeve
> >>>> it. But this is certainly not R-devel?
> >>>>>>>
> >>>>>>> Not sure about devtools which we do not use on CRAN, but simply
> >>>>>>>
> >>>>>>> R CMD check --as-cran
> >>>>>>>
> >>>>>>> with a recent R-devel version on the package tarball should
> >reproduce
> >>>>>>> the findings.
> >>>>>>>
> >>>>>>> Best,
> >>>>>>> Uwe Ligges
> >>>>>>>
> >>>>>>>
> >>>>>>> On 25.03.2019 23:12, cartograflow using gmail.com
> <mailto:cartograflow using gmail.com>
> >>>> <mailto:cartograflow using gmail.com
> <mailto:cartograflow using gmail.com>> wrote:
> >>>>>>>> Hello,
> >>>>>>>> I've submitted my package cartograflow and I received an email
> >from
> >>>> your teeam that it does not pass the incoming checks
> >>>> automatically.Debian:
> >>>>
> ><https://win-builder.r-project.org/incoming_pretest/cartograflow_0.0.0.9000_20190324_230822/Debian/00check.log>
> >>>>>>>> Status: 1 ERROR, 2 WARNINGs, 1 NOTE
> >>>>>>>>
> >>>>>>>> So, I've made the new check on my plateform (linux ubuntu) and
> >the
> >>>> check is OK.I used : ==> devtools::check(args =
> >>>> c('--no-manual','--as-cran'))Status is :
> >>>>>>>> ── R CMD check results ────────────────────────────
> >cartograflow
> >>>> 0.0.0.9000 ────
> >>>>>>>> Duration: 54.6s
> >>>>>>>> 0 errors ✔ | 0 warnings ✔ | 0 notes ✔
> >>>>>>>> R CMD check succeeded
> >>>>>>>> Can you help me to fix the problem?
> >>>>>>>> Thanks in advance to your replySylvain
> >>>>>>>> [[alternative HTML version deleted]]
> >>>>>>>>
> >>>>>>>> ______________________________________________
> >>>>>>>> R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org>
> >>>> <mailto:R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org>> mailing list
> >>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >>>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>> [[alternative HTML version deleted]]
> >>>>>>>
> >>>>>>> ______________________________________________
> >>>>>>> R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org>
> ><mailto:R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org>>
> >>>> mailing list
> >>>>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >>>>
> >>>>>> [[alternative HTML version deleted]]
> >>>>>>
> >>>>>> ______________________________________________
> >>>>>> R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org>
> ><mailto:R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org>>
> >>>> mailing list
> >>>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >>>>>>
> >>>>>
> >>>>> ______________________________________________
> >>>>> R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org>
> ><mailto:R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org>>
> >>>> mailing list
> >>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >>>>>
> >>>>>
> >>>>>
> >>>>> [[alternative HTML version deleted]]
> >>>>>
> >>>>> ______________________________________________
> >>>>> R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org>
> ><mailto:R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org>>
> >>>> mailing list
> >>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >>>>>
> >>>
> >>> ______________________________________________
> >>> R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org> mailing list
> >>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >>>
> >>
> >>
> >> [[alternative HTML version deleted]]
> >>
> >> ______________________________________________
> >> R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org> mailing list
> >> https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >>
> >> [[alternative HTML version deleted]]
> >>
> >> ______________________________________________
> >> R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org> mailing list
> >> https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >>
> >
> >
> > [[alternative HTML version deleted]]
> >
> >______________________________________________
> >R-package-devel using r-project.org
> <mailto:R-package-devel using r-project.org> mailing list
> >https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
> --
> Sent from my phone. Please excuse my brevity.
>
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