[R-pkg-devel] Ubuntu Linux: Package suggested but not available

[Gábor Csárdi]

I think this means that the ucminf package was not installed properly.
There is probably something about it in the log....

G.

On Thu, Feb 7, 2019 at 5:15 PM Goldfeld, Keith
<Keith.Goldfeld using nyulangone.org> wrote:
>
> I did just take a look at the log, which may provide some insight, though not to me.
>
> This is the key part of the message where things go awry:
>
> #> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> #> unable to load shared object '/home/docker/R/ucminf/libs/ucminf.so':
> #>      : cannot open shared object file: No such file or directory
> #> ERROR: lazy loading failed for package ‘ordinal’
>
> Does this pinpoint the problem? If so, what can I do about it?
>
>
>
> And here is the full log from the attempt to install ordinal.
>
> #> * installing *source* package ‘ordinal’ ...
> #> ** package ‘ordinal’ successfully unpacked and MD5 sums checked
> #> ** libs
> #> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c get_fitted.c -o get_fitted.o
> #> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
> #> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c links.c -o links.o
> #> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utilityFuns.c -o utilityFuns.o
> #> g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ordinal.so get_fitted.o init.o links.o utilityFuns.o -L/usr/lib/R/lib -lR
> #> installing to /home/docker/R/ordinal/libs
> #> ** R
> #> ** data
> #> *** moving datasets to lazyload DB
> #> ** inst
> #> ** byte-compile and prepare package for lazy loading
> #> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> #> unable to load shared object '/home/docker/R/ucminf/libs/ucminf.so':
> #> libRblas.so: cannot open shared object file: No such file or directory
> #> ERROR: lazy loading failed for package ‘ordinal’
> #> * removing ‘/home/docker/R/ordinal’
>
> On 2/7/19, 11:56 AM, "Gábor Csárdi" <csardi.gabor using gmail.com> wrote:
>
>     You probably have an error earlier in the R-hub build log that
>     explains why ordinal failed to install.
>
>     Gabor
>
>     On Thu, Feb 7, 2019 at 4:44 PM Goldfeld, Keith
>     <Keith.Goldfeld using nyulangone.org> wrote:
>     >
>     > I am using devtools::check_rhub() before submitting a new version of my package simstudy to CRAN. I am getting an error message about a package I use in the vignette from the Ubuntu Linux platform:
>     >
>     > * checking package dependencies ... ERROR
>     > Package suggested but not available: ‘ordinal’
>     >
>     > The suggested packages are required for a complete check.
>     > Checking can be attempted without them by setting the environment
>     > variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
>     >
>     >
>     > This is not an issue for any of the other platforms. Any thoughts about how I can address this?
>     >
>     > Thanks - Keith
>     >
>     >
>     >
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