[R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio

[Rampal Etienne]

Dear Duncan,

I don't get it when using R CMD check.

I only get it when building/loading using roxygen2 or when I call 
load_all (which roxygen2 does too, I think). load_all calls load_dll 
which then throws this error. I have registered my routines in 
R_init_secsse.c:

void R_init_secsse(DllInfo *dll)
{
   R_registerRoutines(dll, NULL, NULL, FortranEntries, NULL);
   R_useDynamicSymbols(dll, FALSE);
}

Any suggestions?

Cheers, Rampal


On 06-Nov-18 22:50, Duncan Murdoch wrote:
> On 06/11/2018 3:27 PM, Rampal Etienne wrote:
>> Dear Georgi,
>>
>> Thanks for your suggestions. I have tried to install the development
>> version of roxygen2, but to no avail.
>>
>> I don't have a Collate field in DESCRIPTION.
>>
>> devtools::check() gives me:
>>
>> Updating secsse documentation Loading secsse Registered S3 method
>> overwritten by 'dplyr': method from as.data.frame.tbl_df tibble
>> Registered S3 method overwritten by 'geiger': method from
>> unique.multiPhylo ape Error in nativeRoutines[[lib]] <- routines :
>> object 'nativeRoutines' not found
>
> Do you get that error if you run "R CMD check" on the tarball of your 
> package?
>
> If so, how comfortable are you with debugging R code?  I can tell you 
> how to debug the check process, but it's a little tricky.
>
> Duncan Murdoch
>
>>
>>
>> Any other suggestions?
>>
>> Cheers, Rampal
>>
>> On 02-Nov-18 08:33, Georgi Boshnakov wrote:
>>> Try installing the latest development version of roxygen2, if you 
>>> are not using it already.
>>> There was a bug in the released version preventing installation in 
>>> some cases.
>>> If you don't want to use development version of roxygen2,
>>> try putting all filenames in the Collate field in DESCRIPTION on one 
>>> line and make sure that there is a single space
>>> between them. This should work if your problem is what I think.
>>>
>>> By the way, in such cases you will get more informative messages if 
>>> you run devtools::check().
>>>
>>> -- 
>>> Georgi Boshnakov
>>>
>>>
>>> ________________________________________
>>> From: R-package-devel [r-package-devel-bounces using r-project.org] on 
>>> behalf of Rampal Etienne [rampaletienne using gmail.com]
>>> Sent: 01 November 2018 22:40
>>> To: r-package-devel using r-project.org
>>> Subject: [R-pkg-devel] nativeRoutines error when using roxygen2 in 
>>> RStudio
>>>
>>> Since a few weeks (after updating R-devel and Rtools) I get the
>>> following error when trying to build a package or document it, when
>>> using roxygen2 in RStudio:
>>>
>>> In R CMD INSTALL Error in nativeRoutines[[lib]] <- routines : object
>>> 'nativeRoutines' not found Calls: suppressPackageStartupMessages ...
>>> withCallingHandlers -> <Anonymous> -> load_all -> load_dll Execution 
>>> halted
>>>
>>> When I disable roxygen2, I do not get this error, but of course the
>>> documentation is not created.
>>>
>>> I have installed the latest versions of RStudio, Rtools, R-devel,
>>> roxygen2, pkgload, but the problem persists.
>>>
>>> Does anybody have a clue what is causing this? I am using Windows 10,
>>> and the package contains Fortran code.
>>>
>>> Kind regards,
>>> Rampal Etienne
>>>
>>>           [[alternative HTML version deleted]]
>>>
>>> ______________________________________________
>>> R-package-devel using r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>
>>
>>     [[alternative HTML version deleted]]
>>
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>