[R-pkg-devel] Rcpp.package.skeleton -- Rcmd check --as-cran Windows

Peter Clifford [peter.clifford@stats.ox.ac.uk] peter.clifford at stats.ox.ac.uk
Mon Aug 28 18:10:24 CEST 2017


On Mon, Aug 28, 2017 at 4:53 PM, Dirk Eddelbuettel <edd at debian.org> wrote:

>
> On 28 August 2017 at 10:21, Peter Clifford [peter.clifford at stats.ox.ac.uk]
> wrote:
> | R version 3.4.0 and 3.4.1 with Rcpp 0.12.12 Windows 7.
>
> Potentially wrong list here as it is an Rcpp question...
>
> | Trying to fix persistent "Found no calls to: 'R_registerRoutines',
> | 'R_useDynamicSymbols'" problem, when running Rcmd check --as-cran.
> |
> | Eventually gave up with my own package and tried the simplest possible
> case
> | using Rcpp.package.skeleton("test") with defaults, i.e. the hello_world
> | example.
> | That works fine with Rcmd build test and Rcmd check test_1.0.tar.gz, but
> if
> | I try Rcmd check --as-cran test_1.0.tar.gz I get the NOTE:
> |
> | File 'test/libs/x64/test.dll':
> |   Found no calls to: 'R_registerRoutines', 'R_useDynamicSymbols'
> |
> | It is good practice to register native routines and to disable symbol
> | search.
> |
> | I don't whether there really is a registration problem and if there is,
> how
> | to fix it.
> |
> | I'd be grateful for suggestions. Thanks.
>
> I cannot reproduce this.  Full log below -- new package, and running
> compileAttributes() creates the registration as it should.
>
> (For all the R Core members in the audience: We still need pre-build /
> post-build hooks like cleanup to have R CMD foo do more things. Happy to
> work
> on that if somewhat can work with me to shepherd this in ...)
>
> Dirk
>
>
> edd at bud:/tmp$ r -e 'Rcpp::Rcpp.package.skeleton("barePackage")'
> Creating directories ...
> Creating DESCRIPTION ...
> Creating NAMESPACE ...
> Creating Read-and-delete-me ...
> Saving functions and data ...
> Making help files ...
> Done.
> Further steps are described in './barePackage/Read-and-delete-me'.
>
> Adding Rcpp settings
>  >> added Imports: Rcpp
>  >> added LinkingTo: Rcpp
>  >> added useDynLib directive to NAMESPACE
>  >> added importFrom(Rcpp, evalCpp) directive to NAMESPACE
>  >> added example src file using Rcpp attributes
>  >> added Rd file for rcpp_hello_world
>  >> compiled Rcpp attributes
> edd at bud:/tmp$
> edd at bud:/tmp$ build.r barePackagePlus/    # simple littler wrapper
> * checking for file ‘barePackagePlus/DESCRIPTION’ ... OK
> * preparing ‘barePackagePlus’:
> * checking DESCRIPTION meta-information ... OK
> * cleaning src
> * installing the package to process help pages
> * saving partial Rd database
> * cleaning src
> * checking for LF line-endings in source and make files
> * checking for empty or unneeded directories
> * building ‘barePackagePlus_1.0.tar.gz’
>
> edd at bud:/tmp$
> edd at bud:/tmp$ RD CMD check --as-cran barePackage_1.0.tar.gz
> * using log directory ‘/tmp/barePackage.Rcheck’
> * using R Under development (unstable) (2017-08-24 r73125)
> * using platform: x86_64-pc-linux-gnu (64-bit)
> * using session charset: UTF-8
> * using option ‘--as-cran’
> * checking for file ‘barePackage/DESCRIPTION’ ... OK
> * checking extension type ... Package
> * this is package ‘barePackage’ version ‘1.0’
> * checking CRAN incoming feasibility ... NOTE
> Maintainer: ‘Your Name <your at email.com>’
>
> New submission
> * checking package namespace information ... OK
> * checking package dependencies ... OK
> * checking if this is a source package ... OK
> * checking if there is a namespace ... OK
> * checking for executable files ... OK
> * checking for hidden files and directories ... OK
> * checking for portable file names ... OK
> * checking for sufficient/correct file permissions ... OK
> * checking whether package ‘barePackage’ can be installed ... OK
> * checking installed package size ... OK
> * checking package directory ... OK
> * checking DESCRIPTION meta-information ... OK
> * checking top-level files ... OK
> * checking for left-over files ... OK
> * checking index information ... OK
> * checking package subdirectories ... OK
> * checking R files for non-ASCII characters ... OK
> * checking R files for syntax errors ... OK
> * checking whether the package can be loaded ... OK
> * checking whether the package can be loaded with stated dependencies ...
> OK
> * checking whether the package can be unloaded cleanly ... OK
> * checking whether the namespace can be loaded with stated dependencies
> ... OK
> * checking whether the namespace can be unloaded cleanly ... OK
> * checking loading without being on the library search path ... OK
> * checking use of S3 registration ... OK
> * checking dependencies in R code ... OK
> * checking S3 generic/method consistency ... OK
> * checking replacement functions ... OK
> * checking foreign function calls ... OK
> * checking R code for possible problems ... OK
> * checking Rd files ... OK
> * checking Rd metadata ... OK
> * checking Rd line widths ... OK
> * checking Rd cross-references ... OK
> * checking for missing documentation entries ... OK
> * checking for code/documentation mismatches ... OK
> * checking Rd \usage sections ... OK
> * checking Rd contents ... OK
> * checking for unstated dependencies in examples ... OK
> * checking line endings in C/C++/Fortran sources/headers ... OK
> * checking compiled code ... OK
> * checking examples ... OK
> * checking PDF version of manual ... OK
> * DONE
>
> Status: 1 NOTE
> See
>   ‘/tmp/barePackage.Rcheck/00check.log’
> for details.
>
>
> edd at bud:/tmp$
>
>
>
>
> --
> http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
>
> ______________________________________________
> R-package-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel


Apologies Dirk, I should have emphasized that this is on Windows 7.  I
tried it on a Linux box later with no problem. I sent it to this list
because I thought it might be a general problem for package development in
Windows.

Thanks

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