[R-pkg-devel] no visible global function definition for ‘par’

[Cathy Lee Gierke]

That is the obvious solution, but it doesn't seem correct:  I have pdf
included in the description, and namespace files, yet it is being called
out.  Additionally, aren't most of these pkgs in the packages included by
default?

And up until yesterday, I didn't have any of these problems.  I've been
compiling and running this for several years.  But now I want to release to
CRAN, so I've been fixing minor issues....and suddenly this mass of Notes.

Thank you,

Cathy Lee Gierke


*“Darkness cannot drive out darkness: only light can do that. Hate cannot
drive out hate: only love can do that.” *
*“The arc of the moral universe is long, but it bends towards justice.”*
*“Nothing in the world is more dangerous than sincere ignorance and
conscientious stupidity.” *
*“Never forget that everything Hitler did in Germany was legal.”   *
*“Forgiveness is not an occasional act, it is a constant attitude.” *
*“Injustice anywhere is a threat to justice everywhere.”  *

― Martin Luther King Jr.

<http://www.goodreads.com/author/show/23924.Martin_Luther_King_Jr_>

On Mon, Jan 30, 2017 at 10:52 AM, Brian G. Peterson <brian at braverock.com>
wrote:

> The error you reference below is pretty clear, I think.
>
> You need to add imports for all the functions you're using from other
> packages.
>
> See: https://cran.r-project.org/doc/manuals/r-release/R-exts.
> html#Specifying-imports-and-exports
>
> Regards,
>
> Brian
>
>
> --
> Brian G. Petersonhttp://braverock.com/brian/
> Ph: 773-459-4973 <(773)%20459-4973>
> IM: bgpbraverock
>
>
> On Mon, 2017-01-30 at 10:39 -0600, Cathy Lee Gierke wrote:
>
> Yes, that seemed to get rid of the NOTE....but it doesn't seem to make
> much difference other than that.  i.e., it seems to process the same using
> CATkit vs CATkit_2.06.tar.gz!
>
> Here is the main error that I am getting.  I just upgraded to the latest R
> version, fyi.
>
> Everything was fine, a few minor warnings...now this.  Description and
> namespace are proper.  These pkgs should all be part of the R base, aren't
> they? Anyone know why I should get these errors?  Thanks!
>
> * checking R code for possible problems ... NOTE
>
> Actogram: no visible global function definition for ‘par’
>
> Actogram: no visible global function definition for ‘barplot’
>
> Actogram: no visible global function definition for ‘box’
>
> Actogram: no visible global function definition for ‘text’
>
> Actogram: no visible global function definition for ‘mtext’
>
> Actogram: no visible binding for global variable ‘end’
>
> AutoCorr: no visible global function definition for ‘par’
>
> AutoCorr: no visible global function definition for ‘layout’
>
> AutoCorr: no visible global function definition for ‘acf’
>
> AutoCorr: no visible global function definition for ‘abline’
>
> AutoCorr: no visible global function definition for ‘title’
>
> AutoCorr: no visible global function definition for ‘mtext’
>
> AutoCorr: no visible global function definition for ‘var’
>
> AutoCorr: no visible binding for global variable ‘end’
>
> CATCosinor: no visible global function definition for ‘par’
>
> CATCosinor: no visible global function definition for ‘pdf’
>
> CATCosinor: no visible global function definition for ‘jpeg’
>
> CATCosinor: no visible global function definition for ‘png’
>
> CATCosinor: no visible global function definition for ‘tiff’
>
> ......... A zillion more for every function I have......
>
> periCosinor: no visible global function definition for ‘par’
>
> periCosinor: no visible global function definition for ‘fft’
>
> Undefined global functions or variables:
>
>   TukeyHSD abline acf aov as.raster axis barplot box boxplot ccf
>
>   coefficients dev.cur dev.off drop1 end fft gray heat.colors image
>
>   jpeg layout legend lines median model.tables mtext na.action na.omit
>
>   palette par pdf pf plot plot.new png points rainbow rasterImage
>
>   read.table str strwidth tail terrain.colors text tiff title ts var
>
>   write.table
>
> Consider adding
>
>   importFrom("grDevices", "as.raster", "dev.cur", "dev.off", "gray",
>
>              "heat.colors", "jpeg", "palette", "pdf", "png", "rainbow",
>
>              "terrain.colors", "tiff")
>
>   importFrom("graphics", "abline", "axis", "barplot", "box", "boxplot",
>
>              "image", "layout", "legend", "lines", "mtext", "par",
>
>              "plot", "plot.new", "points", "rasterImage", "strwidth",
>
>              "text", "title")
>
>   importFrom("stats", "TukeyHSD", "acf", "aov", "ccf", "coefficients",
>
>              "drop1", "end", "fft", "median", "model.tables",
>
>              "na.action", "na.omit", "pf", "ts", "var")
>
>   importFrom("utils", "read.table", "str", "tail", "write.table")
>
> to your NAMESPACE file.
>
> Cathy Lee Gierke
>
>
> *“Darkness cannot drive out darkness: only light can do that. Hate cannot
> drive out hate: only love can do that.” *
> *“The arc of the moral universe is long, but it bends towards justice.”*
> *“Nothing in the world is more dangerous than sincere ignorance and
> conscientious stupidity.” *
> *“Never forget that everything Hitler did in Germany was legal.”   *
> *“Forgiveness is not an occasional act, it is a constant attitude.” *
> *“Injustice anywhere is a threat to justice everywhere.”  *
>
> ― Martin Luther King Jr.
>
> <http://www.goodreads.com/author/show/23924.Martin_Luther_King_Jr_>
>
> On Mon, Jan 30, 2017 at 10:05 AM, Brian G. Peterson <brian at braverock.com>
> wrote:
>
> On Mon, 2017-01-30 at 09:45 -0600, Cathy Lee Gierke wrote:
> >  building ‘CATkit_2.06.tar.gz’
>
> R CMD build creates a tarball
>
> > x-134-84-0-217:CATkit user$ *R CMD check CATkit*
>
> but you are checknig the directory, not the tarball.
>
> do
>
> R CMD check CATkit_2.06.tar.gz
>
> instead.
>
> Regards,
>
> Brian
>
>
>

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