[R-pkg-devel] warning from win_build

[Ben Bolker]

  I think this is a ggplot2-related issue.  Matt Dowle posted about it:

http://blog.h2o.ai/2016/12/behind-the-scenes-of-cran/


On 16-12-29 01:16 PM, Roy Mendelssohn - NOAA Federal wrote:
> Hi All:
> 
> I am working on a new submission of my xtractomatic package  (the
> main change being the use of https).  I develop on a Mac.  When I run
> on the Mac:
> 
> devtools::check()
> 
> I get no errors, notes, or warnings.  However, when I run
> devtools::build_win(), the response I get back isL
> 
> 
>> * checking for unstated dependencies in vignettes ... OK * checking
>> package vignettes in 'inst/doc' ... OK * checking re-building of
>> vignette outputs ... WARNING Error in re-building vignettes: ... 
>> Quitting from lines 248-261 (Usingxtractomatic.Rmd) Error:
>> processing vignette 'Usingxtractomatic.Rmd' failed with
>> diagnostics: (converted from warning) Calling 'structure(NULL, *)'
>> is deprecated, as NULL cannot have attributes. Consider
>> 'structure(list(), *)' instead. Execution halted
>> 
> 
> So this error is from my Vignette.  The offending lines appear to
> be:
> 
>> ```{r topotagPlot, fig.align = 'center', fig.width = 6, fig.height
>> = 4, warning = FALSE} require("ggplot2") alldata <- cbind(tagData,
>> topo) alldata$lon <- alldata$lon - 360 z <- ggplot(alldata, aes(x =
>> lon,y = lat)) + geom_point(aes(colour = mean), size = 2.) + 
>> scale_shape_manual(values = c(19, 1)) z + geom_polygon(data = w,
>> aes(x = long, y = lat, group = group), fill = "grey80") + 
>> theme_bw() + scale_colour_gradient("Depth") + coord_fixed(1.3, xlim
>> = xlim, ylim = ylim) + ggtitle("Bathymetry at marlin tag
>> locations")
>> 
>> ```
>> 
> 
> 
> Now the vignette builds fine on my machine,  and  I can run it by
> "hand"  (as an R Notebook, executing each chunk) and it works also.
> Looking at the offending code chunk,  I can honestly say I have no
> idea what the error message is referring to.    When I run by hand,
> I have checked that both tagData and topo are properly defined.  But
> is that the problem,  is the error message from the  cbind?
> 
> Thanks for any help.
> 
> -Roy
> 
> 
> ********************** "The contents of this message do not reflect
> any position of the U.S. Government or NOAA." ********************** 
> Roy Mendelssohn Supervisory Operations Research Analyst NOAA/NMFS 
> Environmental Research Division Southwest Fisheries Science Center 
> ***Note new street address*** 110 McAllister Way Santa Cruz, CA
> 95060 Phone: (831)-420-3666 Fax: (831) 420-3980 e-mail:
> Roy.Mendelssohn at noaa.gov www: http://www.pfeg.noaa.gov/
> 
> "Old age and treachery will overcome youth and skill." "From those
> who have been given much, much will be expected" "the arc of the
> moral universe is long, but it bends toward justice" -MLK Jr.
> 
> ______________________________________________ 
> R-package-devel at r-project.org mailing list 
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>