[R-pkg-devel] Nit-picky vignette questions

Thierry Onkelinx thierry.onkelinx at inbo.be
Thu Dec 8 22:23:33 CET 2016


Hi Roy,

Have a look at the lintr package:
https://github.com/jimhester/lintr/blob/master/README.md
It works stand alone and integrates with several editors.

Best regards,


ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature and
Forest
team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
Kliniekstraat 25
1070 Anderlecht
Belgium

To call in the statistician after the experiment is done may be no more
than asking him to perform a post-mortem examination: he may be able to say
what the experiment died of. ~ Sir Ronald Aylmer Fisher
The plural of anecdote is not data. ~ Roger Brinner
The combination of some data and an aching desire for an answer does not
ensure that a reasonable answer can be extracted from a given body of data.
~ John Tukey

2016-12-08 21:43 GMT+01:00 Roy Mendelssohn - NOAA Federal <
roy.mendelssohn at noaa.gov>:

> Hi All:
>
> In writing a vignette and referring to a function in another package,  say
> the function info() in the rerddap package,  it it better to refer to it as
> the "rerddap function info()" or as "rerddap::info()". This is for the
> vignette, not what I do internally.
>
> Similarly in a code example in a vignette, if I am using the ggplot2
> function ggplot(),  which would preferable  (this is a non-working example
> just to show the alternative)
>
>    require(ggplot2)
>    junk <- ggplot()
>
>
> or
>
>   junk <- ggplot2::ggplot()
>
> Yes these are nitpicky questions,  but as long as I am doing a vignette, I
> might as well try to do all of it in a way that is recommended or
> preferable.
>
> Thanks for any thoughts,
>
> -Roy
>
> PS - Is there something like the Python related program flake8 for R
> code?   I have both Google and Hadley's style recommendations,  but it is
> nice  (though tedious and painful) to have a program that points out any
> inconsistencies from a recommended standard
>
> **********************
> "The contents of this message do not reflect any position of the U.S.
> Government or NOAA."
> **********************
> Roy Mendelssohn
> Supervisory Operations Research Analyst
> NOAA/NMFS
> Environmental Research Division
> Southwest Fisheries Science Center
> ***Note new street address***
> 110 McAllister Way
> Santa Cruz, CA 95060
> Phone: (831)-420-3666
> Fax: (831) 420-3980
> e-mail: Roy.Mendelssohn at noaa.gov www: http://www.pfeg.noaa.gov/
>
> "Old age and treachery will overcome youth and skill."
> "From those who have been given much, much will be expected"
> "the arc of the moral universe is long, but it bends toward justice" -MLK
> Jr.
>
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