[R-pkg-devel] S3 method, useMethod and <-, using Roxygen

Daniel Lüdecke d.luedecke at uke.de
Fri Oct 23 10:37:49 CEST 2015


Ok, the "Note" is due a typo (x <- set_labels(x, values,... "values" 
should be "value").

But still after fixing this, the two warnings remain.

Am 23.10.2015 um 10:30 schrieb Daniel Lüdecke:
> Hello,
> I don't exactly know how to name my problem, so I try to describe it.
>
> In my package (sjmisc), I have a function to set label attributes to
> vectors:
>
> set_labels <- function(x, labels, ...) {
> ...
> }
>
> Usage would be:
> x <- set_labels(x, c("lo", "high"))
>
>
> No I wanted to also add functionality to directly change a value:
> set_labels(x) <- c("lo", "high")
>
>
> So I added this to my package source:
>
> #' @rdname set_labels
> #' @export
> `set_labels<-` <- function(x, force.labels = FALSE, force.values = TRUE,
> value) {
>    UseMethod("set_labels<-")
> }
>
> #' @rdname set_labels
> #' @export
> `set_labels<-.default` <- function(x, force.labels = FALSE, force.values
> = TRUE, value) {
>    x <- set_labels(x, values, force.labels, force.values)
>    x
> }
>
>
> However, running the check gives following note and warnings:
>
> * checking R code for possible problems ... NOTE
> set_labels<-.default: no visible binding for global variable 'values'
> * checking Rd files ... OK
> * checking Rd metadata ... OK
> * checking Rd line widths ... OK
> * checking Rd cross-references ... OK
> * checking for missing documentation entries ... OK
> * checking for code/documentation mismatches ... WARNING
> Functions or methods with usage in documentation object 'set_labels' but
> not in code:
>    set_labels.default
>
> * checking Rd \usage sections ... WARNING
> Objects in \usage without \alias in documentation object 'set_labels':
>    'set_labels.default'
>
> Bad \usage lines found in documentation object 'set_labels':
>      <- value
>
> Functions with \usage entries need to have the appropriate \alias
> entries, and all their arguments documented.
> The \usage entries must correspond to syntactically valid R code.
> See chapter 'Writing R documentation files' in the 'Writing R
> Extensions' manual.
>
>
> I don't know what to do here. Any help is appreciated!
>
> Thanks in advance
> Daniel
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