Hello,

Working on an ubuntu 13.04 with a sessionInfo() specified below, I try to
update my packages, and RSQLite update consistently fails like this:

> update.packages(checkBuilt=TRUE, ask=FALSE)
Warning: package 'RUnit' in library '/usr/lib/R/site-library' will not be
updated
trying URL 'http://cran.rstudio.com/src/contrib/RSQLite_0.11.4.tar.gz'
Content type 'application/x-gzip' length 1599919 bytes (1.5 Mb)
opened URL
==================================================
downloaded 1.5 Mb

* installing *source* package ‘RSQLite’ ...
** package ‘RSQLite’ successfully unpacked and MD5 sums checked
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for gcc... (cached) gcc -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -std=gnu99 accepts -g... (cached) yes
checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed
checking for library containing fdatasync... none required
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE
-DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS
-DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000
-DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0     -fpic  -O3 -pipe  -g  -c
RS-DBI.c -o RS-DBI.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE
-DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS
-DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000
-DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0     -fpic  -O3 -pipe  -g  -c
RS-SQLite.c -o RS-SQLite.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE
-DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS
-DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000
-DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0     -fpic  -O3 -pipe  -g  -c
param_binding.c -o param_binding.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DRSQLITE_USE_BUNDLED_SQLITE
-DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS
-DSQLITE_SOUNDEX -DSQLITE_MAX_VARIABLE_NUMBER=40000
-DSQLITE_MAX_COLUMN=30000 -DTHREADSAFE=0     -fpic  -O3 -pipe  -g  -c
sqlite-all.c -o sqlite-all.o
sqlite-all.c:1:35: warning: extra tokens at end of #ifdef directive
[enabled by default]
gcc: internal compiler error: Killed (program cc1)
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-4.7/README.Bugs> for instructions.
make: *** [sqlite-all.o] Error 4
ubuntu@ip-10-226-133-215:~$ ERROR: compilation failed for package ‘RSQLite’
* removing ‘/usr/lib/R/site-library/RSQLite’
* restoring previous ‘/usr/lib/R/site-library/RSQLite’


SESSION INFO:

> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base


I tried also to install RSQLite via r-cran-rsqlite, but the it installs me
the 0.11.1 instead of 0.11.4.

Any idea of how to get things right?

Thx


-- 
========================
Thibault Helleputte,
+32 498 64 24 63
www.thibaulthelleputte.be
Twitter @THelleputte
========================

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