Good Afternoon,
My name is Gabriel, I'm doing an analysis if there is increase or decrease in dependence on the mutated genes, using 3 or more genes using the fisher exact test.I performed with success an analysis for two genes using fisher.test( ). example of the 2x2 contigency table:
                                      Gene A mutated | Gene A normalGene B mutated|              26                    |        12--------------------------------------------------------------------------------------------Gene B normal |             10                      |          50

Now I'm wondering how can I perform the analysis for 3 genes (and construct the contigency table), as follows: Gene A mutated, Gene A normal, Gene B mutated, Gene B normal, Gene C mutated and Gene C normal. How do I perform a fisher test using fisher.test( ) function using this data (3x3 contigency table)?Can someone help me ?
 		 	   		  
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