Hello,

Maybe this link might help:
http://www.stats.uwo.ca/faculty/yu/Rmpi/install.htm

Regards,
Pascal



2013/8/13 Patrick Connolly <p_connolly@slingshot.co.nz>

>
> With R-3.0.1
>
> Loading required package: Rmpi
> Failed with error:  ‘package ‘Rmpi’ was built before R 3.0.0: please
> re-install it’
>
>
> And when I try to reinstall Rmpi, I get this
>
> <after a whole bunch of 'yes's>
> ....
> checking mpi.h usability... no
> checking mpi.h presence... no
> checking for mpi.h... no
> configure: error: "Cannot find mpi.h header file"
> ERROR: configuration failed for package ‘Rmpi’
>
>
> And attempting to go back....
>
> With R-2.15.3, I get these warnings:
>
> Warning messages:
> 1: package ‘gbm’ was built under R version 3.0.1
> 2: package ‘survival’ was built under R version 3.0.1
> [1] "Error in socketConnection(\"localhost\", port = port, server = TRUE,
> blocking = TRUE,  : \n  cannot open the connection\n"
>
> So there's no going back.
>
> Where do I look for reasons why Rmpi can't find mpi.h header even
> though it was findable before 3.0.1?  I know not to take that message
> too literally since there is a file mpi.h that bash can find.
> Something else is being hinted at but what?
>
>
>
> > sessionInfo()
> R version 3.0.1 (2013-05-16)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
>  [1] LC_CTYPE=en_NZ.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_NZ.UTF-8        LC_COLLATE=en_NZ.UTF-8
>  [5] LC_MONETARY=en_NZ.UTF-8    LC_MESSAGES=en_NZ.UTF-8
>  [7] LC_PAPER=C                 LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] parallel  splines   grDevices utils     stats     graphics  methods
> [8] base
>
> other attached packages:
> [1] gbm_2.1          survival_2.37-4  cairoDevice_2.19 lattice_0.20-15
>
> loaded via a namespace (and not attached):
> [1] grid_3.0.1      multicore_0.1-7
> >
>
>
> TIA
>
> --
> ~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
>    ___    Patrick Connolly
>  {~._.~}                   Great minds discuss ideas
>  _( Y )_                 Average minds discuss events
> (:_~*~_:)                  Small minds discuss people
>  (_)-(_)                              ..... Eleanor Roosevelt
>
> ~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
>
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>

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