Hello Sarah,

Thank you for the help very much.

Please kindly advise manuals dealing with the object list (or dist).
In addition, I would like to show the beta diversity index in a map.
Please kindly advise any other R package in need.

Elaine


On Wed, Jul 17, 2013 at 10:20 PM, Sarah Goslee <sarah.goslee@gmail.com>wrote:

> Replied to on the R-sig-ecology list, with a request not to cross-post.
>
> Briefly, the output is a list with named components, so can be
> extracted as usual.
>
> Sarah
>
> On Wed, Jul 17, 2013 at 5:50 AM, Elaine Kuo <elaine.kuo.tw@gmail.com>
> wrote:
> > Dear List,
> >
> > This is Elaine.
> > I am using beta.part to calculate the beta diversity index.
> > The function of beta.part can generate three kinds of beta diversity
> indice
> > at one time.
> > However, it is Simpson index that I want.
> >
> > The calculation result is composed of three rows and N/A columns (dist
> > class).
> > I do not know how to extract one of the indice in the form of dist class.
> > No relevant example is found the manual.
> > (I tried as.vector as below but failed.)
> >
> > Please kindly help and thank you in advance.
> >
> > Elaine
> >
> > Code
> >  library(betapart)
> >   dist.sim<-beta.pair(dataR, index.family="sor")
> >
> > # Unfold distance matrices into vectors
> >   data.sim<-data.frame(as.vector(dist.sim))
> >
> --
> Sarah Goslee
> http://www.functionaldiversity.org
>
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