Yes, the bioconductor packages do not install through CRAN.  Now that I'm
remembering it, some (maybe all) of the other packages were installed by
dev_tools from github.

I don't know why I was getting that "unable to move temporary installation"
error for Rserve and RCurl, but today it went away and they installed.
 Maybe I needed to reboot, maybe Brian Ripley rewrote something, maybe it
was the double rainbow over Chicago
yesterday<http://chicagoist.com/2013/06/18/double_rainbow_shines_over_chicago.php>...
but today it worked for those two.


On Mon, Jun 17, 2013 at 5:27 PM, Ista Zahn <istazahn@gmail.com> wrote:

> On Mon, Jun 17, 2013 at 6:11 PM, Gene Leynes <gleynes+r@gmail.com> wrote:
> >
> > I should have called this "failure to install several packages"
> >
> > Here is the list of libraries that I can't install in 3.0.1 that I could
> > install to 3.0.0
> >
> > Have others had the same problem?
> >
> > [1] "BiocGenerics"  "BiocInstaller" "gdata"         "graph"
> > [5] "rCharts"       "RCurl"         "Rgraphviz"     "Rserve"
> >
>
> Some of these are bioconductor packages--you won't be able to install
> them using install.packages(). See
> http://www.bioconductor.org/install/. Some (or at least one) has been
> removed from CRAN (see
> http://cran.r-project.org/web/packages/graph/index.html). As for the
> rest, you should post the error messages so we can see what the
> problem is.
>
> Best,
> Ista
> >
> >
> >
> > On Mon, Jun 17, 2013 at 5:02 PM, Gene Leynes <gleynes+r@gmail.com>
> wrote:
> >
> > > Hello,
> > >
> > > I just upgraded to 3.0.1 and a bunch of packages won't install,
> including
> > > Rserve and RCurl
> > >
> > > Any hints on why?
> > >
> > > Thanks
> > >
> > > > install.packages('Rserve')
> > > --- Please select a CRAN mirror for use in this session ---
> > > trying URL '
> > > http://cran.case.edu/bin/windows/contrib/3.0/Rserve_0.6-8.1.zip'
> > > Content type 'application/zip' length 600457 bytes (586 Kb)
> > > opened URL
> > > downloaded 586 Kb
> > >
> > > package ‘Rserve’ successfully unpacked and MD5 sums checked
> > > Warning: unable to move temporary installation ‘C:\Program
> > > Files\R\R-3.0.1\library\fileb6c18782cd4\Rserve’ to ‘C:\Program
> > > Files\R\R-3.0.1\library\Rserve’
> > >
> > > The downloaded binary packages are in
> > >         C:\Users\gene\AppData\Local\Temp\RtmpMZlycb\downloaded_packages
> > >
> > > > sessionInfo()
> > > R version 3.0.1 (2013-05-16)
> > > Platform: x86_64-w64-mingw32/x64 (64-bit)
> > >
> > > locale:
> > > [1] LC_COLLATE=English_United States.1252
> > > [2] LC_CTYPE=English_United States.1252
> > > [3] LC_MONETARY=English_United States.1252
> > > [4] LC_NUMERIC=C
> > > [5] LC_TIME=English_United States.1252
> > >
> > > attached base packages:
> > > [1] stats     graphics  grDevices utils     datasets  methods   base
> > >
> > > loaded via a namespace (and not attached):
> > > [1] tools_3.0.1
> > > >
> > >
> > >
> >
> >         [[alternative HTML version deleted]]
> >
> >
> > ______________________________________________
> > R-help@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> >
>

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