barcode antibody name gene name protein expression value TCGA-A2-A0CQ-01A-11-A13B-20 14-3-3_epsilon-M-C YWHAE -1.295053759 TCGA-A2-A0CQ-01A-11-A13B-20 4E-BP1-R-V EIF4EBP1 -1.088146693 TCGA-A2-A0CQ-01A-11-A13B-20 4E-BP1_pS65-R-V EIF4EBP1 -1.941476567 TCGA-A2-A0CQ-01A-11-A13B-20 4E-BP1_pT170-R-V EIF4EBP1 -2.025190661 TCGA-A2-A0CQ-01A-11-A13B-20 4E-BP1_pT37-R-V EIF4EBP1 -1.107141504 TCGA-A2-A0CQ-01A-11-A13B-20 53BP1-R-C TP53BP1 1.234530743 TCGA-A2-A0CQ-01A-11-A13B-20 A-Raf_pS299-R-NA ARAF -2.070392499 TCGA-A2-A0CQ-01A-11-A13B-20 ACC1-R-C ACACA .946651224 TCGA-A2-A0CQ-01A-11-A13B-20 ACC_pS79-R-V ACACA ACACB .215599584 TCGA-A2-A0CQ-01A-11-A13B-20 AIB1-M-V NCOA3 -1.644088036 TCGA-A2-A0CQ-01A-11-A13B-20 AMPK_alpha-R-C PRKAA1 .415301857 TCGA-A2-A0CQ-01A-11-A13B-20 AMPK_pT172-R-V PRKAA1 1.788935193 TCGA-A2-A0CQ-01A-11-A13B-20 ANLN-M-NA ANLN .364786072 TCGA-A2-A0CQ-01A-11-A13B-20 AR-R-V AR .691947161 TCGA-A2-A0CQ-01A-11-A13B-20 ATM-R-NA ATM 1.677683084 TCGA-A2-A0CQ-01A-11-A13B-20 Akt-R-V AKT1 AKT2 AKT3 1.354259993 TCGA-A2-A0CQ-01A-11-A13B-20 Akt_pS473-R-V AKT1 AKT2 AKT3 -3.568111856 TCGA-A2-A0CQ-01A-11-A13B-20 Akt_pT308-R-V AKT1 AKT2 AKT3 -2.860361263 TCGA-A2-A0CQ-01A-11-A13B-20 Annexin_I-R-V ANXA1 1.846137261 TCGA-A2-A0CQ-01A-11-A13B-20 B-Raf-M-NA BRAF 1.493710963 TCGA-A2-A0CQ-01A-11-A13B-20 Bak-R-C BAK1 -.014392738 TCGA-A2-A0CQ-01A-11-A13B-20 Bax-R-V BAX -.291494093 TCGA-A2-A0CQ-01A-11-A13B-20 Bcl-2-M-V BCL2 .841725268 TCGA-A2-A0CQ-01A-11-A13B-20 Bcl-X-R-C BCL2L1 -1.201024102 TCGA-A2-A0CQ-01A-11-A13B-20 Bcl-xL-R-C BCL2L1 -1.360742792 TCGA-A2-A0CQ-01A-11-A13B-20 Beclin-G-V BECN1 .481549586 TCGA-A2-A0CQ-01A-11-A13B-20 Bid-R-C BID -1.508154817 TCGA-A2-A0CQ-01A-11-A13B-20 Bim-R-V BCL2L11 -.202831548 TCGA-A2-A0CQ-01A-11-A13B-20 C-Raf-R-V RAF1 -1.044579531 TCGA-A2-A0CQ-01A-11-A13B-20 C-Raf_pS338-R-C RAF1 -1.604174501 TCGA-A2-A0CQ-01A-11-A13B-20 CD31-M-V PECAM1 -.820367899 TCGA-A2-A0CQ-01A-11-A13B-20 CD49b-M-V ITGA2 -1.919595753 TCGA-A2-A0CQ-01A-11-A13B-20 CDK1-R-V CDC2 -1.503463695 TCGA-A2-A0CQ-01A-11-A13B-20 COX-2-R-C PTGS2 -.156943728 TCGA-A2-A0CQ-01A-11-A13B-20 Caspase-7_cleavedD198-R-C CASP7 -.092617721 TCGA-A2-A0CQ-01A-11-A13B-20 Caspase-8-M-C CASP8 -.961421969 TCGA-A2-A0CQ-01A-11-A13B-20 Caspase-9_cleavedD330-R-C CASP9 -.159607467 TCGA-A2-A0CQ-01A-11-A13B-20 Caveolin-1-R-V CAV1 2.252184711 TCGA-A2-A0CQ-01A-11-A13B-20 Chk1-R-V CHEK1 -.0491848979999999 TCGA-A2-A0CQ-01A-11-A13B-20 Chk1_pS345-R-C CHEK1 -.419408383 TCGA-A2-A0CQ-01A-11-A13B-20 Chk2-M-C CHEK2 -.851470699 TCGA-A2-A0CQ-01A-11-A13B-20 Chk2_pT68-R-C CHEK2 -2.042098975 TCGA-A2-A0CQ-01A-11-A13B-20 Claudin-7-R-V CLDN7 1.130702253 TCGA-A2-A0CQ-01A-11-A13B-20 Collagen_VI-R-V COL6A1 3.272868511 TCGA-A2-A0CQ-01A-11-A13B-20 Cyclin_B1-R-V CCNB1 -.985394117 TCGA-A2-A0CQ-01A-11-A13B-20 Cyclin_D1-R-V CCND1 -.528018297 TCGA-A2-A0CQ-01A-11-A13B-20 Cyclin_E1-M-V CCNE1 -3.097519434 TCGA-A2-A0CQ-01A-11-A13B-20 DJ-1-R-C PARK7 1.349477485 TCGA-A2-A0CQ-01A-11-A13B-20 Dvl3-R-V DVL3 -1.011743864 TCGA-A2-A0CQ-01A-11-A13B-20 E-Cadherin-R-V CDH1 1.924037448 TCGA-A2-A0CQ-01A-11-A13B-20 EGFR-R-C EGFR -2.25038732 TCGA-A2-A0CQ-01A-11-A13B-20 EGFR_pY1068-R-V EGFR -4.97761898 TCGA-A2-A0CQ-01A-11-A13B-20 EGFR_pY1173-R-C EGFR -1.75587714 TCGA-A2-A0CQ-01A-11-A13B-20 EGFR_pY992-R-V EGFR -1.264647026 TCGA-A2-A0CQ-01A-11-A13B-20 ER-alpha-R-V ESR1 3.409917636 TCGA-A2-A0CQ-01A-11-A13B-20 ER-alpha_pS118-R-V ESR1 .704665985 TCGA-A2-A0CQ-01A-11-A13B-20 ERCC1-M-C ERCC1 .693441488 TCGA-A2-A0CQ-01A-11-A13B-20 ERK2-R-NA MAPK1 3.204664806 TCGA-A2-A0CQ-01A-11-A13B-20 FAK-R-C PTK2 2.032503877 TCGA-A2-A0CQ-01A-11-A13B-20 FOXO3a-R-C FOXO3 -.233639671 TCGA-A2-A0CQ-01A-11-A13B-20 FOXO3a_pS318_S321-R-C FOXO3 .48152804 TCGA-A2-A0CQ-01A-11-A13B-20 Fibronectin-R-C FN1 4.790957432 TCGA-A2-A0CQ-01A-11-A13B-20 GAB2-R-V GAB2 -.686153139 TCGA-A2-A0CQ-01A-11-A13B-20 GATA3-M-V GATA3 2.375224902 TCGA-A2-A0CQ-01A-11-A13B-20 GSK3-alpha-beta-M-V GSK3A GSK3B 2.294229905 TCGA-A2-A0CQ-01A-11-A13B-20 GSK3-alpha-beta_pS21_S9-R-V GSK3A GSK3B .96221517 TCGA-A2-A0CQ-01A-11-A13B-20 HER2-M-V ERBB2 .600370486 TCGA-A2-A0CQ-01A-11-A13B-20 HER2_pY1248-R-V ERBB2 -1.570293276 TCGA-A2-A0CQ-01A-11-A13B-20 HER3-M-C ERBB3 .909549095 TCGA-A2-A0CQ-01A-11-A13B-20 HER3_pY1298-R-V ERBB3 4.516258348 TCGA-A2-A0CQ-01A-11-A13B-20 HSP70-R-C HSPA1A .021595875 TCGA-A2-A0CQ-01A-11-A13B-20 IGF-1R-beta-R-C IGF1R .117980105 TCGA-A2-A0CQ-01A-11-A13B-20 IGFBP2-R-V IGFBP2 1.268121765 TCGA-A2-A0CQ-01A-11-A13B-20 INPP4B-G-C INPP4B 2.331935506 TCGA-A2-A0CQ-01A-11-A13B-20 IRS1-R-V IRS1 .282486962 TCGA-A2-A0CQ-01A-11-A13B-20 JNK2-R-C MAPK9 -.276888371 TCGA-A2-A0CQ-01A-11-A13B-20 K-Ras-M-C KRAS -.373815091 TCGA-A2-A0CQ-01A-11-A13B-20 Ku80-R-C XRCC5 1.34322731 TCGA-A2-A0CQ-01A-11-A13B-20 LBK1-M-NA STK11 1.153879917 TCGA-A2-A0CQ-01A-11-A13B-20 Lck-R-V LCK -1.732179907 TCGA-A2-A0CQ-01A-11-A13B-20 MAPK_pT202_Y204-R-V MAPK1 MAPK3 .351197565 TCGA-A2-A0CQ-01A-11-A13B-20 MEK1-R-V MAP2K1 .578921199 TCGA-A2-A0CQ-01A-11-A13B-20 MEK1_pS217_S221-R-V MAP2K1 .616358804 TCGA-A2-A0CQ-01A-11-A13B-20 MIG-6-M-V ERRFI1 -.745795518 TCGA-A2-A0CQ-01A-11-A13B-20 MSH2-M-C MSH2 -.573192526 TCGA-A2-A0CQ-01A-11-A13B-20 MSH6-R-C MSH6 1.495141929 TCGA-A2-A0CQ-01A-11-A13B-20 Mre11-R-C MRE11A .315969613 TCGA-A2-A0CQ-01A-11-A13B-20 N-Cadherin-R-V CDH2 -2.118815523 TCGA-A2-A0CQ-01A-11-A13B-20 NF-kB-p65_pS536-R-C NFKB1 -.816789796 TCGA-A2-A0CQ-01A-11-A13B-20 NF2-R-C NF2 .398471704 TCGA-A2-A0CQ-01A-11-A13B-20 Notch1-R-V NOTCH1 -2.514561494 TCGA-A2-A0CQ-01A-11-A13B-20 Notch3-R-C NOTCH3 .280627088 TCGA-A2-A0CQ-01A-11-A13B-20 P-Cadherin-R-C CDH3 -1.275810945 TCGA-A2-A0CQ-01A-11-A13B-20 PARP_cleaved-M-C PARP1 -1.721183242 TCGA-A2-A0CQ-01A-11-A13B-20 PCNA-M-V PCNA -1.76824089 TCGA-A2-A0CQ-01A-11-A13B-20 PDK1_pS241-R-V PDK1 .450101725 TCGA-A2-A0CQ-01A-11-A13B-20 PI3K-p110-alpha-R-C PIK3CA -2.442325529 TCGA-A2-A0CQ-01A-11-A13B-20 PKC-alpha-M-V PRKCA .737789579 TCGA-A2-A0CQ-01A-11-A13B-20 PKC-alpha_pS657-R-V PRKCA -1.791401407 TCGA-A2-A0CQ-01A-11-A13B-20 PKC-delta_pS664-R-V PRKCD -.973383047 TCGA-A2-A0CQ-01A-11-A13B-20 PR-R-V PGR 1.539557027 TCGA-A2-A0CQ-01A-11-A13B-20 PRAS40_pT246-R-V AKT1S1 -1.457354422 TCGA-A2-A0CQ-01A-11-A13B-20 PRDX1-R-NA PRDX1 -1.553399489 TCGA-A2-A0CQ-01A-11-A13B-20 PTCH-R-C PTCH1 1.083635595 TCGA-A2-A0CQ-01A-11-A13B-20 PTEN-R-V PTEN -.153440681 TCGA-A2-A0CQ-01A-11-A13B-20 Paxillin-R-V PXN -.480833978 TCGA-A2-A0CQ-01A-11-A13B-20 Pea-15-R-V PEA15 .040133516 TCGA-A2-A0CQ-01A-11-A13B-20 RBM3-M-NA RBM3 .981007922 TCGA-A2-A0CQ-01A-11-A13B-20 Rab25-R-C RAB25 -2.127296755 TCGA-A2-A0CQ-01A-11-A13B-20 Rad50-M-C RAD50 .566394919 TCGA-A2-A0CQ-01A-11-A13B-20 Rad51-M-C RAD51 -1.29934419 TCGA-A2-A0CQ-01A-11-A13B-20 Rb-M-V RB1 -1.201682596 TCGA-A2-A0CQ-01A-11-A13B-20 Rb_pS807_S811-R-V RB1 -1.064740054 TCGA-A2-A0CQ-01A-11-A13B-20 S6-R-NA RPS6 .020584334 TCGA-A2-A0CQ-01A-11-A13B-20 S6_pS235_S236-R-V RPS6 -2.482780533 TCGA-A2-A0CQ-01A-11-A13B-20 S6_pS240_S244-R-V RPS6 -1.343606289 TCGA-A2-A0CQ-01A-11-A13B-20 SETD2-R-NA SETD2 -.705114514 TCGA-A2-A0CQ-01A-11-A13B-20 STAT3_pY705-R-V STAT3 -1.828896948 TCGA-A2-A0CQ-01A-11-A13B-20 STAT5-alpha-R-V STAT5A .938149493 TCGA-A2-A0CQ-01A-11-A13B-20 Shc_pY317-R-NA SHC1 -3.446260565 TCGA-A2-A0CQ-01A-11-A13B-20 Smac-M-V DIABLO -.091459688 TCGA-A2-A0CQ-01A-11-A13B-20 Smad1-R-V SMAD1 .331881788 TCGA-A2-A0CQ-01A-11-A13B-20 Smad3-R-V SMAD3 -1.1083655 TCGA-A2-A0CQ-01A-11-A13B-20 Smad4-M-C SMAD4 -.049064915 TCGA-A2-A0CQ-01A-11-A13B-20 Snail-M-C SNAI2 -1.927235964 TCGA-A2-A0CQ-01A-11-A13B-20 Src-M-V SRC -1.400906981 TCGA-A2-A0CQ-01A-11-A13B-20 Src_pY416-R-C SRC -2.951856055 TCGA-A2-A0CQ-01A-11-A13B-20 Src_pY527-R-V SRC -3.139310555 TCGA-A2-A0CQ-01A-11-A13B-20 Stathmin-R-V STMN1 -1.218296519 TCGA-A2-A0CQ-01A-11-A13B-20 Syk-M-V SYK -.369177861 TCGA-A2-A0CQ-01A-11-A13B-20 TAZ_pS89-R-C WWTR1 .194772544 TCGA-A2-A0CQ-01A-11-A13B-20 Tau-M-C MAPT -1.920659919 TCGA-A2-A0CQ-01A-11-A13B-20 Transglutaminase-M-V TGM2 1.500204516 TCGA-A2-A0CQ-01A-11-A13B-20 Tuberin-R-C TSC2 -.0491047939999999 TCGA-A2-A0CQ-01A-11-A13B-20 VASP-R-C VASP .292006266 TCGA-A2-A0CQ-01A-11-A13B-20 VEGFR2-R-C KDR 3.127082707 TCGA-A2-A0CQ-01A-11-A13B-20 XBP1-G-C XBP1 .541020943 TCGA-A2-A0CQ-01A-11-A13B-20 XIAP-R-C XIAP -1.30791416 TCGA-A2-A0CQ-01A-11-A13B-20 XRCC1-R-C XRCC1 -.61536787 TCGA-A2-A0CQ-01A-11-A13B-20 YAP-R-V YAP1 .761039958 TCGA-A2-A0CQ-01A-11-A13B-20 YAP_pS127-R-C YAP1 .6177855 TCGA-A2-A0CQ-01A-11-A13B-20 YB-1-R-V YBX1 .68365548 TCGA-A2-A0CQ-01A-11-A13B-20 YB-1_pS102-R-V YBX1 -1.579676141 TCGA-A2-A0CQ-01A-11-A13B-20 alpha-Catenin-M-V CTNNA1 .179330625 TCGA-A2-A0CQ-01A-11-A13B-20 beta-Catenin-R-V CTNNB1 2.495564491 TCGA-A2-A0CQ-01A-11-A13B-20 c-Jun_pS73-R-C JUN -1.900616937 TCGA-A2-A0CQ-01A-11-A13B-20 c-Kit-R-V KIT -1.982058618 TCGA-A2-A0CQ-01A-11-A13B-20 c-Met-M-C MET .00818883000000004 TCGA-A2-A0CQ-01A-11-A13B-20 c-Met_pY1235-R-C MET -.905998003 TCGA-A2-A0CQ-01A-11-A13B-20 c-Myc-R-C MYC -.6242801 TCGA-A2-A0CQ-01A-11-A13B-20 cIAP-R-V BIRC2 1.199314443 TCGA-A2-A0CQ-01A-11-A13B-20 eEF2-R-V EEF2 -2.269079954 TCGA-A2-A0CQ-01A-11-A13B-20 eEF2K-R-V EEF2K -.446621033 TCGA-A2-A0CQ-01A-11-A13B-20 eIF4E-R-V EIF4E -.073829532 TCGA-A2-A0CQ-01A-11-A13B-20 mTOR-R-V FRAP1 2.36941401 TCGA-A2-A0CQ-01A-11-A13B-20 p21-R-C CDKN1A -.993519033 TCGA-A2-A0CQ-01A-11-A13B-20 p27-R-V CDKN1B -.066199295 TCGA-A2-A0CQ-01A-11-A13B-20 p27_pT157-R-C CDKN1B -1.381477247 TCGA-A2-A0CQ-01A-11-A13B-20 p27_pT198-R-V CDKN1B -1.739301097 TCGA-A2-A0CQ-01A-11-A13B-20 p38_MAPK-R-C MAPK14 -1.120779196 TCGA-A2-A0CQ-01A-11-A13B-20 p38_pT180_Y182-R-V MAPK14 -1.035856601 TCGA-A2-A0CQ-01A-11-A13B-20 p53-R-V TP53 -3.600912679 TCGA-A2-A0CQ-01A-11-A13B-20 p70S6K-R-V RPS6KB1 .60288451 TCGA-A2-A0CQ-01A-11-A13B-20 p70S6K_pT389-R-V RPS6KB1 -2.873355308 TCGA-A2-A0CQ-01A-11-A13B-20 p90RSK_pT359_S363-R-C RPS6KA1 -.781067764