barcode antibody name gene name protein expression value TCGA-A1-A0SJ-01A-21-A13A-20 14-3-3_epsilon-M-C YWHAE -1.343408665 TCGA-A1-A0SJ-01A-21-A13A-20 4E-BP1-R-V EIF4EBP1 -.7252053 TCGA-A1-A0SJ-01A-21-A13A-20 4E-BP1_pS65-R-V EIF4EBP1 -2.086177746 TCGA-A1-A0SJ-01A-21-A13A-20 4E-BP1_pT170-R-V EIF4EBP1 -2.144573907 TCGA-A1-A0SJ-01A-21-A13A-20 4E-BP1_pT37-R-V EIF4EBP1 -1.640412104 TCGA-A1-A0SJ-01A-21-A13A-20 53BP1-R-C TP53BP1 .256007104 TCGA-A1-A0SJ-01A-21-A13A-20 A-Raf_pS299-R-NA ARAF -2.35735631 TCGA-A1-A0SJ-01A-21-A13A-20 ACC1-R-C ACACA .314608718 TCGA-A1-A0SJ-01A-21-A13A-20 ACC_pS79-R-V ACACA ACACB -.410024237 TCGA-A1-A0SJ-01A-21-A13A-20 AIB1-M-V NCOA3 -1.355591225 TCGA-A1-A0SJ-01A-21-A13A-20 AMPK_alpha-R-C PRKAA1 -.0133513280000002 TCGA-A1-A0SJ-01A-21-A13A-20 AMPK_pT172-R-V PRKAA1 .331656696 TCGA-A1-A0SJ-01A-21-A13A-20 ANLN-M-NA ANLN .0750331639999998 TCGA-A1-A0SJ-01A-21-A13A-20 AR-R-V AR -.710125448 TCGA-A1-A0SJ-01A-21-A13A-20 ATM-R-NA ATM .923588195 TCGA-A1-A0SJ-01A-21-A13A-20 Akt-R-V AKT1 AKT2 AKT3 .945905223 TCGA-A1-A0SJ-01A-21-A13A-20 Akt_pS473-R-V AKT1 AKT2 AKT3 -3.600381232 TCGA-A1-A0SJ-01A-21-A13A-20 Akt_pT308-R-V AKT1 AKT2 AKT3 -2.118153127 TCGA-A1-A0SJ-01A-21-A13A-20 Annexin_I-R-V ANXA1 2.485128855 TCGA-A1-A0SJ-01A-21-A13A-20 B-Raf-M-NA BRAF 1.276964916 TCGA-A1-A0SJ-01A-21-A13A-20 Bak-R-C BAK1 .206890659 TCGA-A1-A0SJ-01A-21-A13A-20 Bax-R-V BAX -.0189209440000001 TCGA-A1-A0SJ-01A-21-A13A-20 Bcl-2-M-V BCL2 -.116914157 TCGA-A1-A0SJ-01A-21-A13A-20 Bcl-X-R-C BCL2L1 -.942091776 TCGA-A1-A0SJ-01A-21-A13A-20 Bcl-xL-R-C BCL2L1 -1.234582515 TCGA-A1-A0SJ-01A-21-A13A-20 Beclin-G-V BECN1 .271210247 TCGA-A1-A0SJ-01A-21-A13A-20 Bid-R-C BID -1.48694106 TCGA-A1-A0SJ-01A-21-A13A-20 Bim-R-V BCL2L11 -.4065243 TCGA-A1-A0SJ-01A-21-A13A-20 C-Raf-R-V RAF1 -1.013566031 TCGA-A1-A0SJ-01A-21-A13A-20 C-Raf_pS338-R-C RAF1 -1.420608503 TCGA-A1-A0SJ-01A-21-A13A-20 CD31-M-V PECAM1 -1.534209205 TCGA-A1-A0SJ-01A-21-A13A-20 CD49b-M-V ITGA2 -1.324756263 TCGA-A1-A0SJ-01A-21-A13A-20 CDK1-R-V CDC2 -1.195833649 TCGA-A1-A0SJ-01A-21-A13A-20 COX-2-R-C PTGS2 .0402478789999998 TCGA-A1-A0SJ-01A-21-A13A-20 Caspase-7_cleavedD198-R-C CASP7 .0968364959999999 TCGA-A1-A0SJ-01A-21-A13A-20 Caspase-8-M-C CASP8 -1.266944179 TCGA-A1-A0SJ-01A-21-A13A-20 Caspase-9_cleavedD330-R-C CASP9 .103967746 TCGA-A1-A0SJ-01A-21-A13A-20 Caveolin-1-R-V CAV1 3.110824211 TCGA-A1-A0SJ-01A-21-A13A-20 Chk1-R-V CHEK1 -.00524246200000011 TCGA-A1-A0SJ-01A-21-A13A-20 Chk1_pS345-R-C CHEK1 -.295876247 TCGA-A1-A0SJ-01A-21-A13A-20 Chk2-M-C CHEK2 -1.523655741 TCGA-A1-A0SJ-01A-21-A13A-20 Chk2_pT68-R-C CHEK2 -2.385849212 TCGA-A1-A0SJ-01A-21-A13A-20 Claudin-7-R-V CLDN7 .294897166 TCGA-A1-A0SJ-01A-21-A13A-20 Collagen_VI-R-V COL6A1 2.550784832 TCGA-A1-A0SJ-01A-21-A13A-20 Cyclin_B1-R-V CCNB1 -.00906926600000013 TCGA-A1-A0SJ-01A-21-A13A-20 Cyclin_D1-R-V CCND1 -.0950336410000001 TCGA-A1-A0SJ-01A-21-A13A-20 Cyclin_E1-M-V CCNE1 -2.2543466 TCGA-A1-A0SJ-01A-21-A13A-20 DJ-1-R-C PARK7 .794959648 TCGA-A1-A0SJ-01A-21-A13A-20 Dvl3-R-V DVL3 -1.081195364 TCGA-A1-A0SJ-01A-21-A13A-20 E-Cadherin-R-V CDH1 .817810726 TCGA-A1-A0SJ-01A-21-A13A-20 EGFR-R-C EGFR -1.799436808 TCGA-A1-A0SJ-01A-21-A13A-20 EGFR_pY1068-R-V EGFR -4.268511748 TCGA-A1-A0SJ-01A-21-A13A-20 EGFR_pY1173-R-C EGFR -1.520702803 TCGA-A1-A0SJ-01A-21-A13A-20 EGFR_pY992-R-V EGFR -1.00494613 TCGA-A1-A0SJ-01A-21-A13A-20 ER-alpha-R-V ESR1 1.24895585 TCGA-A1-A0SJ-01A-21-A13A-20 ER-alpha_pS118-R-V ESR1 .654866742 TCGA-A1-A0SJ-01A-21-A13A-20 ERCC1-M-C ERCC1 .382716713 TCGA-A1-A0SJ-01A-21-A13A-20 ERK2-R-NA MAPK1 4.260297647 TCGA-A1-A0SJ-01A-21-A13A-20 FAK-R-C PTK2 2.320722202 TCGA-A1-A0SJ-01A-21-A13A-20 FOXO3a-R-C FOXO3 -.168073162 TCGA-A1-A0SJ-01A-21-A13A-20 FOXO3a_pS318_S321-R-C FOXO3 .428703587 TCGA-A1-A0SJ-01A-21-A13A-20 Fibronectin-R-C FN1 6.475692255 TCGA-A1-A0SJ-01A-21-A13A-20 GAB2-R-V GAB2 2.089977856 TCGA-A1-A0SJ-01A-21-A13A-20 GATA3-M-V GATA3 .966436462 TCGA-A1-A0SJ-01A-21-A13A-20 GSK3-alpha-beta-M-V GSK3A GSK3B 2.203509251 TCGA-A1-A0SJ-01A-21-A13A-20 GSK3-alpha-beta_pS21_S9-R-V GSK3A GSK3B 1.733181936 TCGA-A1-A0SJ-01A-21-A13A-20 HER2-M-V ERBB2 .677171147 TCGA-A1-A0SJ-01A-21-A13A-20 HER2_pY1248-R-V ERBB2 -1.124999595 TCGA-A1-A0SJ-01A-21-A13A-20 HER3-M-C ERBB3 .549340587 TCGA-A1-A0SJ-01A-21-A13A-20 HER3_pY1298-R-V ERBB3 4.649271624 TCGA-A1-A0SJ-01A-21-A13A-20 HSP70-R-C HSPA1A 1.069281259 TCGA-A1-A0SJ-01A-21-A13A-20 IGF-1R-beta-R-C IGF1R .146204114 TCGA-A1-A0SJ-01A-21-A13A-20 IGFBP2-R-V IGFBP2 -1.234206332 TCGA-A1-A0SJ-01A-21-A13A-20 INPP4B-G-C INPP4B 1.438997562 TCGA-A1-A0SJ-01A-21-A13A-20 IRS1-R-V IRS1 .596487963 TCGA-A1-A0SJ-01A-21-A13A-20 JNK2-R-C MAPK9 -.58831785 TCGA-A1-A0SJ-01A-21-A13A-20 K-Ras-M-C KRAS -.249339515 TCGA-A1-A0SJ-01A-21-A13A-20 Ku80-R-C XRCC5 .643872261 TCGA-A1-A0SJ-01A-21-A13A-20 LBK1-M-NA STK11 .588939181 TCGA-A1-A0SJ-01A-21-A13A-20 Lck-R-V LCK -1.158525519 TCGA-A1-A0SJ-01A-21-A13A-20 MAPK_pT202_Y204-R-V MAPK1 MAPK3 .125768004 TCGA-A1-A0SJ-01A-21-A13A-20 MEK1-R-V MAP2K1 1.09364099 TCGA-A1-A0SJ-01A-21-A13A-20 MEK1_pS217_S221-R-V MAP2K1 .769647879 TCGA-A1-A0SJ-01A-21-A13A-20 MIG-6-M-V ERRFI1 -.232933539 TCGA-A1-A0SJ-01A-21-A13A-20 MSH2-M-C MSH2 -.643279269 TCGA-A1-A0SJ-01A-21-A13A-20 MSH6-R-C MSH6 1.096239783 TCGA-A1-A0SJ-01A-21-A13A-20 Mre11-R-C MRE11A -.0359376510000001 TCGA-A1-A0SJ-01A-21-A13A-20 N-Cadherin-R-V CDH2 -1.889156209 TCGA-A1-A0SJ-01A-21-A13A-20 NF-kB-p65_pS536-R-C NFKB1 -.620668312 TCGA-A1-A0SJ-01A-21-A13A-20 NF2-R-C NF2 -.0914440790000002 TCGA-A1-A0SJ-01A-21-A13A-20 Notch1-R-V NOTCH1 -2.273225506 TCGA-A1-A0SJ-01A-21-A13A-20 Notch3-R-C NOTCH3 .466681299 TCGA-A1-A0SJ-01A-21-A13A-20 P-Cadherin-R-C CDH3 -.661684382 TCGA-A1-A0SJ-01A-21-A13A-20 PARP_cleaved-M-C PARP1 -2.379435242 TCGA-A1-A0SJ-01A-21-A13A-20 PCNA-M-V PCNA -1.30759061 TCGA-A1-A0SJ-01A-21-A13A-20 PDK1_pS241-R-V PDK1 .272748057 TCGA-A1-A0SJ-01A-21-A13A-20 PI3K-p110-alpha-R-C PIK3CA -2.309695424 TCGA-A1-A0SJ-01A-21-A13A-20 PKC-alpha-M-V PRKCA .576490382 TCGA-A1-A0SJ-01A-21-A13A-20 PKC-alpha_pS657-R-V PRKCA -1.391483412 TCGA-A1-A0SJ-01A-21-A13A-20 PKC-delta_pS664-R-V PRKCD -.845272682 TCGA-A1-A0SJ-01A-21-A13A-20 PR-R-V PGR -.648512931 TCGA-A1-A0SJ-01A-21-A13A-20 PRAS40_pT246-R-V AKT1S1 -1.368183966 TCGA-A1-A0SJ-01A-21-A13A-20 PRDX1-R-NA PRDX1 -.916231429 TCGA-A1-A0SJ-01A-21-A13A-20 PTCH-R-C PTCH1 .903246845 TCGA-A1-A0SJ-01A-21-A13A-20 PTEN-R-V PTEN -.45476508 TCGA-A1-A0SJ-01A-21-A13A-20 Paxillin-R-V PXN -.584420225 TCGA-A1-A0SJ-01A-21-A13A-20 Pea-15-R-V PEA15 .103512665 TCGA-A1-A0SJ-01A-21-A13A-20 RBM3-M-NA RBM3 1.879462403 TCGA-A1-A0SJ-01A-21-A13A-20 Rab25-R-C RAB25 -2.434771909 TCGA-A1-A0SJ-01A-21-A13A-20 Rad50-M-C RAD50 .100380693 TCGA-A1-A0SJ-01A-21-A13A-20 Rad51-M-C RAD51 -.97656687 TCGA-A1-A0SJ-01A-21-A13A-20 Rb-M-V RB1 -1.195886194 TCGA-A1-A0SJ-01A-21-A13A-20 Rb_pS807_S811-R-V RB1 -1.650404437 TCGA-A1-A0SJ-01A-21-A13A-20 S6-R-NA RPS6 -.15902889 TCGA-A1-A0SJ-01A-21-A13A-20 S6_pS235_S236-R-V RPS6 -3.107686788 TCGA-A1-A0SJ-01A-21-A13A-20 S6_pS240_S244-R-V RPS6 -1.955845829 TCGA-A1-A0SJ-01A-21-A13A-20 SETD2-R-NA SETD2 -.616299361 TCGA-A1-A0SJ-01A-21-A13A-20 STAT3_pY705-R-V STAT3 -2.536487746 TCGA-A1-A0SJ-01A-21-A13A-20 STAT5-alpha-R-V STAT5A .00992031199999988 TCGA-A1-A0SJ-01A-21-A13A-20 Shc_pY317-R-NA SHC1 -3.82966414 TCGA-A1-A0SJ-01A-21-A13A-20 Smac-M-V DIABLO -.481569856 TCGA-A1-A0SJ-01A-21-A13A-20 Smad1-R-V SMAD1 .0821266669999999 TCGA-A1-A0SJ-01A-21-A13A-20 Smad3-R-V SMAD3 -.993786643 TCGA-A1-A0SJ-01A-21-A13A-20 Smad4-M-C SMAD4 -.179341173 TCGA-A1-A0SJ-01A-21-A13A-20 Snail-M-C SNAI2 -2.155411095 TCGA-A1-A0SJ-01A-21-A13A-20 Src-M-V SRC -.592343868 TCGA-A1-A0SJ-01A-21-A13A-20 Src_pY416-R-C SRC -2.790752197 TCGA-A1-A0SJ-01A-21-A13A-20 Src_pY527-R-V SRC -2.977385894 TCGA-A1-A0SJ-01A-21-A13A-20 Stathmin-R-V STMN1 -1.077157277 TCGA-A1-A0SJ-01A-21-A13A-20 Syk-M-V SYK -.177537561 TCGA-A1-A0SJ-01A-21-A13A-20 TAZ_pS89-R-C WWTR1 .133255066 TCGA-A1-A0SJ-01A-21-A13A-20 Tau-M-C MAPT -1.517201108 TCGA-A1-A0SJ-01A-21-A13A-20 Transglutaminase-M-V TGM2 1.354112241 TCGA-A1-A0SJ-01A-21-A13A-20 Tuberin-R-C TSC2 -.279164929 TCGA-A1-A0SJ-01A-21-A13A-20 VASP-R-C VASP .341907816 TCGA-A1-A0SJ-01A-21-A13A-20 VEGFR2-R-C KDR 3.901944502 TCGA-A1-A0SJ-01A-21-A13A-20 XBP1-G-C XBP1 -.00792542400000018 TCGA-A1-A0SJ-01A-21-A13A-20 XIAP-R-C XIAP -1.451177332 TCGA-A1-A0SJ-01A-21-A13A-20 XRCC1-R-C XRCC1 -1.071448479 TCGA-A1-A0SJ-01A-21-A13A-20 YAP-R-V YAP1 .845776096 TCGA-A1-A0SJ-01A-21-A13A-20 YAP_pS127-R-C YAP1 1.861757551 TCGA-A1-A0SJ-01A-21-A13A-20 YB-1-R-V YBX1 .387110744 TCGA-A1-A0SJ-01A-21-A13A-20 YB-1_pS102-R-V YBX1 -1.599021719 TCGA-A1-A0SJ-01A-21-A13A-20 alpha-Catenin-M-V CTNNA1 -.347287644 TCGA-A1-A0SJ-01A-21-A13A-20 beta-Catenin-R-V CTNNB1 1.067091402 TCGA-A1-A0SJ-01A-21-A13A-20 c-Jun_pS73-R-C JUN -2.338835367 TCGA-A1-A0SJ-01A-21-A13A-20 c-Kit-R-V KIT -1.517574918 TCGA-A1-A0SJ-01A-21-A13A-20 c-Met-M-C MET -.201670399 TCGA-A1-A0SJ-01A-21-A13A-20 c-Met_pY1235-R-C MET -1.090069282 TCGA-A1-A0SJ-01A-21-A13A-20 c-Myc-R-C MYC -1.033432527 TCGA-A1-A0SJ-01A-21-A13A-20 cIAP-R-V BIRC2 .731731029 TCGA-A1-A0SJ-01A-21-A13A-20 eEF2-R-V EEF2 -2.253976839 TCGA-A1-A0SJ-01A-21-A13A-20 eEF2K-R-V EEF2K -1.036399897 TCGA-A1-A0SJ-01A-21-A13A-20 eIF4E-R-V EIF4E .109905262 TCGA-A1-A0SJ-01A-21-A13A-20 mTOR-R-V FRAP1 1.877069564 TCGA-A1-A0SJ-01A-21-A13A-20 p21-R-C CDKN1A -.507173532 TCGA-A1-A0SJ-01A-21-A13A-20 p27-R-V CDKN1B -.683074696 TCGA-A1-A0SJ-01A-21-A13A-20 p27_pT157-R-C CDKN1B -1.861653386 TCGA-A1-A0SJ-01A-21-A13A-20 p27_pT198-R-V CDKN1B -1.479971419 TCGA-A1-A0SJ-01A-21-A13A-20 p38_MAPK-R-C MAPK14 -1.365802343 TCGA-A1-A0SJ-01A-21-A13A-20 p38_pT180_Y182-R-V MAPK14 -.363951142 TCGA-A1-A0SJ-01A-21-A13A-20 p53-R-V TP53 -3.873202063 TCGA-A1-A0SJ-01A-21-A13A-20 p70S6K-R-V RPS6KB1 .911577264 TCGA-A1-A0SJ-01A-21-A13A-20 p70S6K_pT389-R-V RPS6KB1 -2.748980201 TCGA-A1-A0SJ-01A-21-A13A-20 p90RSK_pT359_S363-R-C RPS6KA1 -.825989486