Hi everybody,

 

just arrived at R and immediately I got a problem.

Here's my script:

 

setwd("C:/Users/Tom/Eigene Tools/Programming/R/Data")

blast_hits<-read.table("blastHit_covLenght.txt", header=T)

blast_hits <- as.matrix(blast_hits)

numerical1<-data.matrix(blast_hits, rownames.force = NA)

 

table_no_blast_hits<-read.table("noBlastHits.txt", header=T)

no_blast_hits <- as.matrix(table_no_blast_hits)

numerical2<-data.matrix(no_blast_hits, rownames.force = NA)

 

All<-merge(numerical1, numerical2, all=TRUE)

library(hexbin)

bin<-hexbin(All, xbins=100)

 

# The next line works pretty good, but there is one extrem artefact in the
data, which let collaps all the data to a small area #

 

plot(bin, main="All",colramp=function(n){heat.ob(n,beg=230,end=25)})

 

# So I tried to scale my yaxes, with the next line:

#plot(bin, main="All",ylim=(0,15000),
colramp=function(n){heat.ob(n,beg=230,end=25)})

 

# The following error message is displayed:

#Fehler: Unerwartete(s) ',' in "plot(bin, main="All",ylim=(0,"

# Which I would translate to:
# Error: Unexpected ',' in "plot(bin, main="All",ylim=(0,"

 

I flashing idea would be a great help

Thx Tom 

 


	[[alternative HTML version deleted]]

