Dear all,

Following the advice of David Winsemius, I've restarted my R session : I was able to load rgl library (rgl_0.92.892) ....
Sorry to have bothered you.
Next time, I'll include this step before submitting to R-help ;).

Anyway, thanks for support.

Bests,

=============

> library(rgl)
> sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base     

other attached packages:
[1] rgl_0.92.892   fortunes_1.5-0 snowfall_1.84  snow_0.3-9    



Le Jul 27, 2012 à 3:48 AM, David Winsemius a écrit :

> 
> On Jul 26, 2012, at 4:46 AM, Guillaume Meurice wrote:
> 
>> Dear all,
>> 
>> I was willing to use the library "rgl" to plot some 3D graphics, but unfortunately, I wan't able to instal the library. The error message is below.
>> 
>> I would be very grateful if you could give me any clues about how I can solve this.
>> 
>> 
>> Below you will find :
>> - installation from binaries
>> - installation from sources
>> - sessionInfo()
>> 
> 
> The error messages in the"sources" install dialog suggests a problem with your system installation of freetype. I was running rgl v0.92.861 on Leopard without problems. I just tried installing the current version offered to the GUI installer, v0.92.880, restarting and got an error on attempting to load while in version 2.14.2,
> 
> After updating R to the current version I am able to install rgl_0.92.892 from binary using the GUI Package Installer and then load  and run code in either R64 or 32-bit R.
> 
> >  sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] stats     grDevices utils     datasets  graphics  methods   base
> 
> other attached packages:
> [1] rgl_0.92.892   lattice_0.20-6
> 
> loaded via a namespace (and not attached):
> [1] grid_2.15.1  tools_2.15.1
> 
> 
> You have a fairly full system. I wonder if you should restart and try with a few less packages?
> 
> And as Duncan suggested, you _should_ be posting on the R-SIG-Mac list.
> 
> --
> David.
>> Bests,
>> --
>> Guillaume Meurice - PhD
>> Plateforme de Bioinformatique
>> 
>> Here is the installation from binaries :
>> =======================
>>> install.packages("rgl")
>> trying URL 'http://mirror.ibcp.fr/pub/CRAN/bin/macosx/leopard/contrib/2.15/rgl_0.92.892.tgz'
>> Content type 'application/x-gzip' length 7774197 bytes (7.4 Mb)
>> opened URL
>> ==================================================
>> downloaded 7.4 Mb
>> 
>> 
>> The downloaded binary packages are in
>> 	/var/folders/20/20puJrE0FrWErlnMP5nP6E+++TI/-Tmp-//RtmplpCNL5/downloaded_packages
>>> library(rgl)
>> Error in get(Info[i, 1], envir = env) :
>> internal error -3 in R_decompress1
>> Error: package/namespace load failed for ‘rgl’
>> =======================
>> 
>> 
>> 
>> 
>> Here is the installation from sources :
>> =======================
>>> install.packages("rgl", type="source")
>> trying URL 'http://mirror.ibcp.fr/pub/CRAN/src/contrib/rgl_0.92.892.tar.gz'
>> Content type 'application/x-gzip' length 1713881 bytes (1.6 Mb)
>> opened URL
>> ==================================================
>> downloaded 1.6 Mb
>> 
>> =================================================
>> Setting G.Meurice environment for useful day work
>> 
>> ### Sourcing some useful stuff
>> - ugf.exp.utils.IO.R
>> - cqFea4CGH.R
>> - cqFea4GE.R
>> - cqFea4miRNA.R
>> - cqFea4CH3.R
>> 
>> Loading required package: snow
>> Loading required package: utils
>> ### Defining Global Variables
>> - dir.arraydesign	: directory to agilent array design
>> - dir.svn			: directory to local svn repository
>> 
>> 
>> ### Hooooooooommmmmmmmm
>> It's interesting that SAS Institute feels that non-peer-reviewed software with
>> hidden implementations of analytic methods that cannot be reproduced by others
>> should be trusted when building aircraft engines.
>>  -- Frank Harrell (in response to the statement of the SAS director of
>>     technology product marketing: "We have customers who build engines for
>>     aircraft. I am happy they are not using freeware when I get on a jet.")
>>     R-help (January 2009)
>> 
>> 
>> 
>> 
>> Now it's time to work
>> =================================================
>> * installing *source* package ‘rgl’ ...
>> ** package ‘rgl’ successfully unpacked and MD5 sums checked
>> checking for gcc... gcc -arch x86_64 -std=gnu99
>> checking whether the C compiler works... yes
>> checking for C compiler default output file name... a.out
>> checking for suffix of executables... checking whether we are cross compiling... no
>> checking for suffix of object files... o
>> checking whether we are using the GNU C compiler... yes
>> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
>> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... none needed
>> checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
>> checking for gcc... (cached) gcc -arch x86_64 -std=gnu99
>> checking whether we are using the GNU C compiler... (cached) yes
>> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... (cached) yes
>> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... (cached) none needed
>> checking for libpng-config... no
>> checking libpng... checking for grep that handles long lines and -e... /usr/bin/grep
>> checking for egrep... /usr/bin/grep -E
>> checking for ANSI C header files... rm: conftest.dSYM: is a directory
>> rm: conftest.dSYM: is a directory
>> yes
>> checking for sys/types.h... yes
>> checking for sys/stat.h... yes
>> checking for stdlib.h... yes
>> checking for string.h... yes
>> checking for memory.h... yes
>> checking for strings.h... yes
>> checking for inttypes.h... yes
>> checking for stdint.h... yes
>> checking for unistd.h... yes
>> checking png.h usability... no
>> checking png.h presence... no
>> checking for png.h... no
>> checking for png_read_update_info in -lpng... no
>> configure: libpng header and lib found
>> configure: using libpng dynamic linkage
>> checking for X... libraries /usr/X11/lib, headers
>> checking for glEnd in -lGL... yes
>> checking for gluProject in -lGLU... yes
>> checking for freetype-config... no
>> configure: creating ./config.status
>> config.status: creating src/Makevars
>> ** libs
>> *** arch - x86_64
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c ABCLineSet.cpp -o ABCLineSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c BBoxDeco.cpp -o BBoxDeco.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c Background.cpp -o Background.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c Color.cpp -o Color.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c Disposable.cpp -o Disposable.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c Light.cpp -o Light.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c LineSet.cpp -o LineSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c LineStripSet.cpp -o LineStripSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c Material.cpp -o Material.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c PlaneSet.cpp -o PlaneSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c PointSet.cpp -o PointSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c PrimitiveSet.cpp -o PrimitiveSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c QuadSet.cpp -o QuadSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c RenderContext.cpp -o RenderContext.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c Shape.cpp -o Shape.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c SphereMesh.cpp -o SphereMesh.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c SphereSet.cpp -o SphereSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c SpriteSet.cpp -o SpriteSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c String.cpp -o String.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c Surface.cpp -o Surface.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c TextSet.cpp -o TextSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c Texture.cpp -o Texture.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c Viewpoint.cpp -o Viewpoint.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c api.cpp -o api.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c assert.cpp -o assert.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c callbacks.cpp -o callbacks.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c device.cpp -o device.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c devicemanager.cpp -o devicemanager.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c fps.cpp -o fps.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c ftgl.cpp -o ftgl.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c geom.cpp -o geom.o
>> gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include    -fPIC  -g -O2  -c gl2ps.c -o gl2ps.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c glErrors.cpp -o glErrors.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c glgui.cpp -o glgui.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c gui.cpp -o gui.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c init.cpp -o init.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c par3d.cpp -o par3d.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c pixmap.cpp -o pixmap.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c render.cpp -o render.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c rglmath.cpp -o rglmath.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c rglview.cpp -o rglview.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c scene.cpp -o scene.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c select.cpp -o select.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c win32gui.cpp -o win32gui.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c win32lib.cpp -o win32lib.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c x11gui.cpp -o x11gui.o
>> x11gui.cpp: In constructor ‘gui::X11GUIFactory::X11GUIFactory(const char*)’:
>> x11gui.cpp:468: warning: deprecated conversion from string constant to ‘char*’
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/System/Library/Frameworks/OpenGL.framework/Headers  -DHAVE_PNG_H -DDarwin -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c x11lib.cpp -o x11lib.o
>> g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rgl.so ABCLineSet.o BBoxDeco.o Background.o Color.o Disposable.o Light.o LineSet.o LineStripSet.o Material.o PlaneSet.o PointSet.o PrimitiveSet.o QuadSet.o RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o String.o Surface.o TextSet.o Texture.o Viewpoint.o api.o assert.o callbacks.o device.o devicemanager.o fps.o ftgl.o geom.o gl2ps.o glErrors.o glgui.o gui.o init.o par3d.o pixmap.o render.o rglmath.o rglview.o scene.o select.o win32gui.o win32lib.o x11gui.o x11lib.o -lGLU -lGL -framework OpenGL -dylib_file /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib -lpng -L/usr/X11/lib -lX11 -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
>> mkdir Temp
>> mv x11*.o Temp
>> mkdir -p AGL
>> mv AGL/* .
>> MAKINGAGL=TRUE /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB  -o aglrgl.so *.cpp *.c \
>> 		osx/*.mm osx/*.cpp
>> mv: rename AGL/* to ./*: No such file or directory
>> make: [aglrgl.so] Error 1 (ignored)
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -DHAVE_PNG_H -DRGL_USE_COCOA -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c x11gui.cpp -o x11gui.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -DHAVE_PNG_H -DRGL_USE_COCOA -Iext -I/usr/local/include   -g -O2 -fPIC  -g -O2  -c x11lib.cpp -o x11lib.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -DHAVE_PNG_H -DRGL_USE_COCOA -Iext -I/usr/local/include   -fPIC   -c osx/osxgui.mm -o osx/osxgui.o
>> osx/osxgui.mm:9:2: error: #error Cocoa backend reguires FreeType font reneder
>> make[1]: *** [osx/osxgui.o] Error 1
>> make: *** [aglrgl.so] Error 1
>> ERROR: compilation failed for package ‘rgl’
>> * removing ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/rgl’
>> * restoring previous ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/rgl’
>> 
>> The downloaded source packages are in
>> 	‘/private/var/folders/20/20puJrE0FrWErlnMP5nP6E+++TI/-Tmp-/RtmplpCNL5/downloaded_packages’
>> Warning message:
>> In install.packages("rgl", type = "source") :
>> installation of package ‘rgl’ had non-zero exit status
>> =======================
>> 
>> 
>> 
>>> sessionInfo()
>> R version 2.15.1 (2012-06-22)
>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>> 
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>> 
>> attached base packages:
>> [1] splines   stats     graphics  grDevices datasets  utils     methods   base
>> 
>> other attached packages:
>> [1] plotrix_3.4-2              RColorBrewer_1.0-5         mclust_3.4.11              multicore_0.1-7            LVSmiRNA_1.6.0
>> [6] vsn_3.24.0                 affy_1.34.0                MASS_7.3-19                quantreg_4.81              SparseM_0.96
>> [11] Biobase_2.16.0             BiocGenerics_0.2.0         pvclust_1.2-2              arrayQualityMetrics_3.12.0 impute_1.30.0
>> [16] marray_1.34.0              limma_3.12.1               fortunes_1.5-0             snowfall_1.84              snow_0.3-9
>> 
>> loaded via a namespace (and not attached):
>> [1] affyio_1.24.0         affyPLM_1.32.0        annotate_1.34.1       AnnotationDbi_1.18.1  beadarray_2.6.0       BeadDataPackR_1.8.0
>> [7] BiocInstaller_1.4.7   Biostrings_2.24.1     Cairo_1.5-1           cluster_1.14.2        colorspace_1.1-1      DBI_0.2-5
>> [13] genefilter_1.38.0     grid_2.15.1           Hmisc_3.9-3           hwriter_1.3           IRanges_1.14.4        KernSmooth_2.23-8
>> [19] lattice_0.20-6        latticeExtra_0.6-19   plyr_1.7.1            preprocessCore_1.18.0 reshape2_1.2.1        RSQLite_0.11.1
>> [25] setRNG_2011.11-2      stats4_2.15.1         stringr_0.6           survival_2.36-14      SVGAnnotation_0.93-1  tools_2.15.1
>> [31] XML_3.9-4             xtable_1.7-0          zlibbioc_1.2.0
>> 
>> 
>> 	[[alternative HTML version deleted]]
>> 
>> ______________________________________________
>> R-help@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
> 
> David Winsemius, MD
> West Hartford, CT
> 

--
Guillaume Meurice - PhD
Plateforme de Bioinformatique






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