Hi R users,

Working from a PC, I am trying to install the spatstat package on a Unix cluster. I created the following PBS file to send a job array:

#!/bin/bash -ue

#PBS -m ae
#PBS -M my email
#PBS -J 1-45
#PBS -A my username
#PBS -N job name
#PBS -l resources
#PBS -l walltime

cd $PBS_O_WORKDIR

module load R/2.14.1

R CMD INSTALL -l /path/to/library spatstat

R CMD BATCH /path/to/folder/Script_$PBS_ARRAY_INDEX.R

Obviosuly I failed to understand pag 19 of the R admin manual because I keep getting the following error message:

Warning: invalid package ‘spatstat’
Error: ERROR: no packages specified

I'd appreciate if you can point me in the right direction

Thanks
Lorenzo


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