Hi Sandeep,

I am not entirely sure about this but you might be interested in using
‘clValid’ package. In which Biological measures seems to be good option to
map function with GO terms. I haven't used it myself.

Neetika

On Tue, Sep 13, 2011 at 1:21 PM, Sandeep Amberkar <ssamberkar@gmail.com>wrote:

> Dear All,
>
> I need to fetch GO ontologies for Homo sapiens with their mappings to
> corresponding Uniprot identifiers. I would be using this information to
> compare result from a clustering algorithm with existing protein complexes.
> This would be a test to check how the clustering algorithm accurately
> captures GO terms with respect to the known protein complexes. Can anyone
> suggest a simple workflow with the requisite packages? I am trying to find
> out to fetch GO ontologies for homo sapiens with bioconductor but most
> packages are designed for enrichment analysis. Am I missing something here?
> Any help would be greatly appreciated.
>
> Thanks a lot in advance.
>
>
> --
> Warm Regards,
> Sandeep Amberkar
> BioQuant,BQ26,
> Im Neuenheimer Feld 267,
> D-69120,Heidelberg
>
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