Hi,

Thanks for your reply and for the fix. I installed R.matlab v1.3.3 and I can confirm that now the problem is solved. 
I appreciate your help!

Kind regards,
-Claude

On Sep 19, 2010, at 07:35 , Henrik Bengtsson wrote:

> Hi.
> 
> On Thu, Sep 16, 2010 at 1:04 AM, Claude Flener <claude.flener@utu.fi> wrote:
>> Hi,
>> 
>> I'm trying to read a .mat file into R (2.11.1) with medium success so far. The file I have is a MATLAB 5.0 MAT-file exported from RiverSurveyor LIVE software (http://www.sontek.com/software.php).
>> I have R.matlab and Rcompression installed and readMat() starts reading the file, as can be seen in verbose mode (hence medium success), but then gives the following error:
>> 
>> Error in dim(matrix) <- dimensionsArray$dim :
>>  dims [product 1] do not match the length of object [0]
>> 
>> I put the whole verbose output at the end of this email and an example file here: http://users.utu.fi/cjflen/files/riversurveyor.mat
>> 
>> Can anyone give me some advice on what the problem might be, and how to solve it? This is the first time I'm using the R.matlab package and I have no access to or any experience with Matlab, so changing the mat file or saving it in a different format is not an option for me.
> 
> I've downloaded  'riversurveyor.mat' and can verify that with R.matlab v1.3.2
> 
> library("R.matlab");
> data <- readMat("riversurveyor.mat");
> 
> gives that error.  I can also confirm that Matlab v7 can indeed read
> it.  Saving its content by
> 
> save -V6 riversurveyor_fix.mat *
> 
> and then
> 
> library("R.matlab");
> data <- readMat("riversurveyor_fix.mat");
> 
> is an immediate workaround.
> 
> The error occurs only when there is an empty string (=="") and not
> when Matlab saves the file.
> 
> I've submitted R.matlab v1.3.3 to CRAN, which contains a workaround
> for this particular case.  Keep an eye on
> http://cran.r-project.org/web/packages/R.matlab/ to see when it is
> available.
> 
> Thxs for the report,
> 
> /Henrik
> 
>> 
>> Kind regards,
>> Claude
>> 
>> 
>>> foo <- readMat("riversurveyor.mat", verbose=TRUE)
>> Trying to read MAT v5 file stream...
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>>        ..$ : num [1, 1] -0.28
>>        ..$ : num [1, 1] -0.278
>>        ..$ : num [1, 1] -0.272
>>        ..$ : num [1, 1] 0.276
>>        ..$ : num [1, 1] -0.275
>>        ..$ : num [1, 1] 0.276
>>        ..$ : num [1, 1] -0.278
>>        ..- attr(*, "dim")= int [1:3] 16 1 1
>>        ..- attr(*, "dimnames")=List of 3
>>        .. ..$ : chr [1:16] "E0" "E1" "E2" "E3" ...
>>        .. ..$ : NULL
>>        .. ..$ : NULL
>>   List of 1
>>    $ System:List of 7
>>     ..$ : chr [1, 1] "184"
>>     ..$ : int [1, 1] 0
>>     ..$ : int [1, 1] 80
>>     ..$ :List of 3
>>     .. ..$ : int [1, 1] 3000
>>     .. ..$ : int [1, 1] 500
>>     .. ..$ : int [1, 1] 1000
>>     .. ..- attr(*, "dim")= int [1:3] 3 1 1
>>     .. ..- attr(*, "dimnames")=List of 3
>>     .. .. ..$ : chr [1:3] "F0" "F1" "F2"
>>     .. .. ..$ : NULL
>>     .. .. ..$ : NULL
>>     ..$ :List of 16
>>     .. ..$ : num [1, 1] 1.19
>>     .. ..$ : num [1, 1] 0.00608
>>     .. ..$ : num [1, 1] -1.19
>>     .. ..$ : num [1, 1] -0.00945
>>     .. ..$ : num [1, 1] -0.00426
>>     .. ..$ : num [1, 1] 1.19
>>     .. ..$ : num [1, 1] -0.00537
>>     .. ..$ : num [1, 1] -1.18
>>     .. ..$ : num [1, 1] -0.278
>>     .. ..$ : num [1, 1] -0.276
>>     .. ..$ : num [1, 1] -0.273
>>     .. ..$ : num [1, 1] -0.275
>>     .. ..$ : num [1, 1] 0.275
>>     .. ..$ : num [1, 1] -0.273
>>     .. ..$ : num [1, 1] 0.276
>>     .. ..$ : num [1, 1] -0.278
>>     .. ..- attr(*, "dim")= int [1:3] 16 1 1
>>     .. ..- attr(*, "dimnames")=List of 3
>>     .. .. ..$ : chr [1:16] "E0" "E1" "E2" "E3" ...
>>     .. .. ..$ : NULL
>>     .. .. ..$ : NULL
>>     ..$ :List of 16
>>     .. ..$ : num [1, 1] 0.826
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..$ : num [1, 1] 0
>>     .. ..- attr(*, "dim")= int [1:3] 16 1 1
>>     .. ..- attr(*, "dimnames")=List of 3
>>     .. .. ..$ : chr [1:16] "E0" "E1" "E2" "E3" ...
>>     .. .. ..$ : NULL
>>     .. .. ..$ : NULL
>>     ..$ :List of 16
>>     .. ..$ : num [1, 1] 0.848
>>     .. ..$ : num [1, 1] -0.822
>>     .. ..$ : num [1, 1] -0.844
>>     .. ..$ : num [1, 1] 0.821
>>     .. ..$ : num [1, 1] 0.821
>>     .. ..$ : num [1, 1] 0.832
>>     .. ..$ : num [1, 1] -0.826
>>     .. ..$ : num [1, 1] -0.828
>>     .. ..$ : num [1, 1] -0.275
>>     .. ..$ : num [1, 1] -0.28
>>     .. ..$ : num [1, 1] -0.278
>>     .. ..$ : num [1, 1] -0.272
>>     .. ..$ : num [1, 1] 0.276
>>     .. ..$ : num [1, 1] -0.275
>>     .. ..$ : num [1, 1] 0.276
>>     .. ..$ : num [1, 1] -0.278
>>     .. ..- attr(*, "dim")= int [1:3] 16 1 1
>>     .. ..- attr(*, "dimnames")=List of 3
>>     .. .. ..$ : chr [1:16] "E0" "E1" "E2" "E3" ...
>>     .. .. ..$ : NULL
>>     .. .. ..$ : NULL
>>     ..- attr(*, "dim")= int [1:3] 7 1 1
>>     ..- attr(*, "dimnames")=List of 3
>>     .. ..$ : chr [1:7] "SerialNumber" "FirmwareVersion" "FirmwareRevision" "Frequency" ...
>>     .. ..$ : NULL
>>     .. ..$ : NULL
>>  List of 1
>>   $ System:List of 7
>>    ..$ : chr [1, 1] "184"
>>    ..$ : int [1, 1] 0
>>    ..$ : int [1, 1] 80
>>    ..$ :List of 3
>>    .. ..$ : int [1, 1] 3000
>>    .. ..$ : int [1, 1] 500
>>    .. ..$ : int [1, 1] 1000
>>    .. ..- attr(*, "dim")= int [1:3] 3 1 1
>>    .. ..- attr(*, "dimnames")=List of 3
>>    .. .. ..$ : chr [1:3] "F0" "F1" "F2"
>>    .. .. ..$ : NULL
>>    .. .. ..$ : NULL
>>    ..$ :List of 16
>>    .. ..$ : num [1, 1] 1.19
>>    .. ..$ : num [1, 1] 0.00608
>>    .. ..$ : num [1, 1] -1.19
>>    .. ..$ : num [1, 1] -0.00945
>>    .. ..$ : num [1, 1] -0.00426
>>    .. ..$ : num [1, 1] 1.19
>>    .. ..$ : num [1, 1] -0.00537
>>    .. ..$ : num [1, 1] -1.18
>>    .. ..$ : num [1, 1] -0.278
>>    .. ..$ : num [1, 1] -0.276
>>    .. ..$ : num [1, 1] -0.273
>>    .. ..$ : num [1, 1] -0.275
>>    .. ..$ : num [1, 1] 0.275
>>    .. ..$ : num [1, 1] -0.273
>>    .. ..$ : num [1, 1] 0.276
>>    .. ..$ : num [1, 1] -0.278
>>    .. ..- attr(*, "dim")= int [1:3] 16 1 1
>>    .. ..- attr(*, "dimnames")=List of 3
>>    .. .. ..$ : chr [1:16] "E0" "E1" "E2" "E3" ...
>>    .. .. ..$ : NULL
>>    .. .. ..$ : NULL
>>    ..$ :List of 16
>>    .. ..$ : num [1, 1] 0.826
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..$ : num [1, 1] 0
>>    .. ..- attr(*, "dim")= int [1:3] 16 1 1
>>    .. ..- attr(*, "dimnames")=List of 3
>>    .. .. ..$ : chr [1:16] "E0" "E1" "E2" "E3" ...
>>    .. .. ..$ : NULL
>>    .. .. ..$ : NULL
>>    ..$ :List of 16
>>    .. ..$ : num [1, 1] 0.848
>>    .. ..$ : num [1, 1] -0.822
>>    .. ..$ : num [1, 1] -0.844
>>    .. ..$ : num [1, 1] 0.821
>>    .. ..$ : num [1, 1] 0.821
>>    .. ..$ : num [1, 1] 0.832
>>    .. ..$ : num [1, 1] -0.826
>>    .. ..$ : num [1, 1] -0.828
>>    .. ..$ : num [1, 1] -0.275
>>    .. ..$ : num [1, 1] -0.28
>>    .. ..$ : num [1, 1] -0.278
>>    .. ..$ : num [1, 1] -0.272
>>    .. ..$ : num [1, 1] 0.276
>>    .. ..$ : num [1, 1] -0.275
>>    .. ..$ : num [1, 1] 0.276
>>    .. ..$ : num [1, 1] -0.278
>>    .. ..- attr(*, "dim")= int [1:3] 16 1 1
>>    .. ..- attr(*, "dimnames")=List of 3
>>    .. .. ..$ : chr [1:16] "E0" "E1" "E2" "E3" ...
>>    .. .. ..$ : NULL
>>    .. .. ..$ : NULL
>>    ..- attr(*, "dim")= int [1:3] 7 1 1
>>    ..- attr(*, "dimnames")=List of 3
>>    .. ..$ : chr [1:7] "SerialNumber" "FirmwareVersion" "FirmwareRevision" "Frequency" ...
>>    .. ..$ : NULL
>>    .. ..$ : NULL
>>   List of 7
>>    $ type      : chr "miMATRIX"
>>    $ signed    : logi NA
>>    $ sizeOf    : int 0
>>    $ what      : num 0
>>    $ nbrOfBytes: int 632
>>    $ padding   : num 0
>>    $ compressed: logi FALSE
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 72
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:3] 3000 500 1000
>>      List of 1
>>       $ : num [1:3, 1] 3000 500 1000
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 440
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:48] 1.18967 -0.00426 -0.27781 0.27493 0.00608 ...
>>      List of 1
>>       $ : num [1:4, 1:4, 1:3] 1.18967 -0.00426 -0.27781 0.27493 0.00608 ...
>>   List of 1
>>    $ Transformation.Matrices:List of 2
>>     ..$ : num [1:3, 1] 3000 500 1000
>>     ..$ : num [1:4, 1:4, 1:3] 1.18967 -0.00426 -0.27781 0.27493 0.00608 ...
>>     ..- attr(*, "dim")= int [1:3] 2 1 1
>>     ..- attr(*, "dimnames")=List of 3
>>     .. ..$ : chr [1:2] "Frequency" "Matrix"
>>     .. ..$ : NULL
>>     .. ..$ : NULL
>>  List of 1
>>   $ Transformation.Matrices:List of 2
>>    ..$ : num [1:3, 1] 3000 500 1000
>>    ..$ : num [1:4, 1:4, 1:3] 1.18967 -0.00426 -0.27781 0.27493 0.00608 ...
>>    ..- attr(*, "dim")= int [1:3] 2 1 1
>>    ..- attr(*, "dimnames")=List of 3
>>    .. ..$ : chr [1:2] "Frequency" "Matrix"
>>    .. ..$ : NULL
>>    .. ..$ : NULL
>>   List of 7
>>    $ type      : chr "miMATRIX"
>>    $ signed    : logi NA
>>    $ sizeOf    : int 0
>>    $ what      : num 0
>>    $ nbrOfBytes: int 274856
>>    $ padding   : num 0
>>    $ compressed: logi FALSE
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 1856
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:226] 180 180 180 180 180 180 180 180 180 180 ...
>>      List of 1
>>       $ : num [1:226, 1] 180 180 180 180 180 180 180 180 180 180 ...
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 1856
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:226] -180 -180 -180 -180 -180 -180 -180 -180 -180 -180 ...
>>      List of 1
>>       $ : num [1:226, 1] -180 -180 -180 -180 -180 -180 -180 -180 -180 -180 ...
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 1856
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:226] 0 0 0 0 0 0 0 0 0 0 ...
>>      List of 1
>>       $ : num [1:226, 1] 0 0 0 0 0 0 0 0 0 0 ...
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 1856
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:226] 11.6 11.6 11.6 11.6 11.6 ...
>>      List of 1
>>       $ : num [1:226, 1] 11.6 11.6 11.6 11.6 11.6 ...
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 1856
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:226] 3.36e+08 3.36e+08 3.36e+08 3.36e+08 3.36e+08 ...
>>      List of 1
>>       $ : num [1:226, 1] 3.36e+08 3.36e+08 3.36e+08 3.36e+08 3.36e+08 ...
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 253176
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:31640] 30.4 30.4 31 80.3 70.6 ...
>>      List of 1
>>       $ : num [1:35, 1:4, 1:226] 30.4 30.4 31 80.3 70.6 ...
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 1856
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:226] 1 2 3 4 5 6 7 8 9 10 ...
>>      List of 1
>>       $ : num [1:226, 1] 1 2 3 4 5 6 7 8 9 10 ...
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 1856
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:226] 14 14 14 14 14 14 14 14 14 14 ...
>>      List of 1
>>       $ : num [1:226, 1] 14 14 14 14 14 14 14 14 14 14 ...
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 1856
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:226] 0.2 0.2 0.2 0.2 0.2 ...
>>      List of 1
>>       $ : num [1:226, 1] 0.2 0.2 0.2 0.2 0.2 ...
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 1856
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:226] 0.1 0.1 0.1 0.1 0.1 ...
>>      List of 1
>>       $ : num [1:226, 1] 0.1 0.1 0.1 0.1 0.1 ...
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 1856
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:226] 2 2 2 2 2 2 2 2 2 2 ...
>>      List of 1
>>       $ : num [1:226, 1] 2 2 2 2 2 2 2 2 2 2 ...
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 1856
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>         num [1:226] 43 40 42 41 41 41 41 41 41 42 ...
>>      List of 1
>>       $ : num [1:226, 1] 43 40 42 41 41 41 41 41 41 42 ...
>>       List of 7
>>        $ type      : chr "miMATRIX"
>>        $ signed    : logi NA
>>        $ sizeOf    : int 0
>>        $ what      : num 0
>>        $ nbrOfBytes: int 936
>>        $ padding   : num 0
>>        $ compressed: logi FALSE
>>           List of 7
>>            $ type      : chr "miMATRIX"
>>            $ signed    : logi NA
>>            $ sizeOf    : int 0
>>            $ what      : num 0
>>            $ nbrOfBytes: int 56
>>            $ padding   : num 0
>>            $ compressed: logi FALSE
>>             int [1:3] 100 101 103
>>          List of 1
>>           $ : chr [1, 1] "deg"
>>           List of 7
>>            $ type      : chr "miMATRIX"
>>            $ signed    : logi NA
>>            $ sizeOf    : int 0
>>            $ what      : num 0
>>            $ nbrOfBytes: int 56
>>            $ padding   : num 0
>>            $ compressed: logi FALSE
>>             int [1:3] 100 101 103
>>          List of 1
>>           $ : chr [1, 1] "deg"
>>           List of 7
>>            $ type      : chr "miMATRIX"
>>            $ signed    : logi NA
>>            $ sizeOf    : int 0
>>            $ what      : num 0
>>            $ nbrOfBytes: int 56
>>            $ padding   : num 0
>>            $ compressed: logi FALSE
>>             int [1:3] 100 101 103
>>          List of 1
>>           $ : chr [1, 1] "deg"
>>           List of 7
>>            $ type      : chr "miMATRIX"
>>            $ signed    : logi NA
>>            $ sizeOf    : int 0
>>            $ what      : num 0
>>            $ nbrOfBytes: int 56
>>            $ padding   : num 0
>>            $ compressed: logi FALSE
>>             int [1:4] 100 101 103 67
>>          List of 1
>>           $ : chr [1, 1] "degC"
>>           List of 7
>>            $ type      : chr "miMATRIX"
>>            $ signed    : logi NA
>>            $ sizeOf    : int 0
>>            $ what      : num 0
>>            $ nbrOfBytes: int 48
>>            $ padding   : num 0
>>            $ compressed: logi FALSE
>>             int(0)
>> Error in dim(matrix) <- dimensionsArray$dim :
>>  dims [product 1] do not match the length of object [0]
>> 
>> 
>> 
>> 
>> 
>>        [[alternative HTML version deleted]]
>> 
>> ______________________________________________
>> R-help@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>> 



	[[alternative HTML version deleted]]

