Dear all,

please could you suggest any R functions or packages (or external programs),
that

a. take as input a large number (> 10 000) of short 20-30 nt sequences, and
do
sequence assembly, to reconstruct larger (extended) 30-50 sequences ?

b. take as input a larger number of sequences (100 000 - 1 mil) and cluster
these
sequences in distinct classes based on the sequence similarity  ?

thanks a lot,

bogdan

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