Thanks Martin, your reply was extremely helpful.

It took me a bit of time to figure out what TEXINPUTS are and where they
should be specify, but it is working now. Just for reference, I had to
include an "export TEXINPUTS" statement in my .bashrc for pdflatex to work
in a command line, and add a path in the TEXINPUTS environment variable in
Kile Tools > Configure Kile > Latex > General.

Sebastien

On Wed, Mar 17, 2010 at 8:00 PM, Martin Morgan <mtmorgan@fhcrc.org> wrote:

> I don't know Kile details, but arrange for pdflatex to be invoked as
>
>  R CMD pdflatex
>
> or for your TEXINPUTS environment variable to include the output
> suggested by
>
>  R CMD env |grep TEXINPUTS
>
> Martin
>
> On 03/17/2010 04:48 PM, Sébastien Bihorel wrote:
> > Dear R-users,
> >
> > I want to give a try to Sweave and Latex but I am having some problems
> > compiling my .Rnw files within Kile. I have followed the recommendations
> > given in http://tolstoy.newcastle.edu.au/R/e5/help/08/10/4277, but they
> do
> > not seem to address my particular problem.
> >
> > I am using R 2.11.0 and Kile v 2.0.83 on an OpenSUSE11.2 installation
> (KDE
> > 4.3 environment). According to the log (see below), Kile is unable to
> locate
> > the Sweave.sty file (which is actually stored in
> /usr/lib/R/share/texmf/).
> >
> > Any advise would be welcome.
> >
> > Sebastien
> >
> >
> >
> >  *****
> >
> > ***** Sweave output:
> >
> > ***** cd "/home/sebastien/Documents/scaRabee/scaRabee_latex"
> >
> > ***** sweave -ld scaRabee.Rnw
> >
> > *****
> >
> > Run Sweave and postprocess with LaTeX directly from the command line
> >
> > - create PDF via pdflatex
> >
> >  R version 2.11.0 Under development (unstable) (2010-02-17 r51148)
> >
> > Copyright (C) 2010 The R Foundation for Statistical Computing
> >
> > ISBN 3-900051-07-0
> >
> > R is free software and comes with ABSOLUTELY NO WARRANTY.
> >
> > You are welcome to redistribute it under certain conditions.
> >
> > Type 'license()' or 'licence()' for distribution details.
> >
> >  Natural language support but running in an English locale
> >
> > R is a collaborative project with many contributors.
> >
> > Type 'contributors()' for more information and
> >
> > 'citation()' on how to cite R or R packages in publications.
> >
> > Type 'demo()' for some demos, 'help()' for on-line help, or
> >
> > 'help.start()' for an HTML browser interface to help.
> >
> > Type 'q()' to quit R.
> >
> > &gt; Sweave(file='scaRabee.Rnw');
> >
> > Writing to file scaRabee.tex
> >
> > Processing code chunks ...
> >
> > You can now run LaTeX on 'scaRabee.tex'
> >
> > &gt;
> >
> > LaTeX on produced TeX files
> >
> > - using hardcoded list of 'pdfLaTeX and friends' commands
> >
> > PDF creation
> >
> > This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7)
> >
> > %&-line parsing enabled.
> >
> > entering extended mode
> >
> > (./scaRabee.tex
> >
> > LaTeX2e &lt;2005/12/01&gt;
> >
> > Babel &lt;v3.8l&gt; and hyphenation patterns for english, usenglishmax,
> > dumylang, noh
> >
> > yphenation, german-x-2008-06-18, ngerman-x-2008-06-18, ancientgreek,
> ibycus,
> > ar
> >
> > abic, basque, bulgarian, catalan, pinyin, coptic, croatian, czech,
> danish,
> > dutc
> >
> > h, esperanto, estonian, farsi, finnish, french, galician, german,
> ngerman,
> > mono
> >
> > greek, greek, hungarian, icelandic, indonesian, interlingua, irish,
> italian,
> > la
> >
> > tin, mongolian, mongolian2a, bokmal, nynorsk, polish, portuguese,
> romanian,
> > rus
> >
> > sian, sanskrit, serbian, slovak, slovenian, spanish, swedish, turkish,
> > ukenglis
> >
> > h, ukrainian, uppersorbian, welsh, loaded.
> >
> > (/usr/share/texmf/tex/latex/base/article.cls
> >
> > Document Class: article 2005/09/16 v1.4f Standard LaTeX document class
> >
> > (/usr/share/texmf/tex/latex/base/size10.clo))
> >
> > (/usr/share/texmf/tex/latex/ucs/ucs.sty
> >
> > (/usr/share/texmf/tex/latex/ucs/data/uni-global.def))
> >
> > (/usr/share/texmf/tex/latex/base/inputenc.sty
> >
> > (/usr/share/texmf/tex/latex/ucs/utf8x.def))
> >
> > (/usr/share/texmf/tex/latex/amsmath/amsmath.sty
> >
> > For additional information on amsmath, use the `?' option.
> >
> > (/usr/share/texmf/tex/latex/amsmath/amstext.sty
> >
> > (/usr/share/texmf/tex/latex/amsmath/amsgen.sty))
> >
> > (/usr/share/texmf/tex/latex/amsmath/amsbsy.sty)
> >
> > (/usr/share/texmf/tex/latex/amsmath/amsopn.sty))
> >
> > (/usr/share/texmf/tex/latex/amsfonts/amsfonts.sty)
> >
> > (/usr/share/texmf/tex/latex/amsfonts/amssymb.sty)
> >
> > (/usr/share/texmf/tex/latex/base/fontenc.sty)
> >
> > (/usr/share/texmf/tex/latex/graphics/graphicx.sty
> >
> > (/usr/share/texmf/tex/latex/graphics/keyval.sty)
> >
> > (/usr/share/texmf/tex/latex/graphics/graphics.sty
> >
> > (/usr/share/texmf/tex/latex/graphics/trig.sty)
> >
> > (/usr/lib/texmf/tex/latex/config/graphics.cfg)
> >
> > (/usr/share/texmf/tex/latex/pdftex-def/pdftex.def)))
> >
> > ! LaTeX Error: File `Sweave.sty' not found.
> >
> > Type X to quit or &lt;RETURN&gt; to proceed,
> >
> > or enter new name. (Default extension: sty)
> >
> >       [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
>
> --
> Martin Morgan
> Computational Biology / Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N.
> PO Box 19024 Seattle, WA 98109
>
> Location: Arnold Building M1 B861
> Phone: (206) 667-2793
>

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