I am running  the last R version on SuSE 11.1.
I installed the Bioconductor environment following the instructions on the web. As a consequence some
core packages from Bioconductors were installed.
I need to add some more packages. So I tried biomaRt as follows. 
It does not get installed correctly. 
Please see the following sequence.
Thank you in advance.
Maura

> source("http://bioconductor.org/biocLite.R")
Warning messages:
1: In safeSource() : Redefining ‘biocinstall’
2: In safeSource() : Redefining ‘biocinstallPkgGroups’
3: In safeSource() : Redefining ‘biocinstallRepos’
> > biocLite("biomaRt")
Running biocinstall version 2.4.11 with R version 2.9.0 
Your version of R requires version 2.4 of Bioconductor.
Warning in install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies,  :
  argument 'lib' is missing: using '/home/mauede/R/x86_64-unknown-linux-gnu-library/2.9'
also installing the dependencies ‘XML’, ‘RCurl’

trying URL 'http://bioconductor.org/packages/2.4/extra/src/contrib/XML_2.5-1.tar.gz'
Content type 'application/x-gzip' length 676201 bytes (660 Kb)
opened URL
==================================================
downloaded 660 Kb

trying URL 'http://bioconductor.org/packages/2.4/extra/src/contrib/RCurl_0.98-1.tar.gz'
Content type 'application/x-gzip' length 470071 bytes (459 Kb)
opened URL
==================================================
downloaded 459 Kb

trying URL 'http://bioconductor.org/packages/2.4/bioc/src/contrib/biomaRt_2.0.0.tar.gz'
Content type 'application/x-gzip' length 200617 bytes (195 Kb)
opened URL
==================================================
downloaded 195 Kb


The downloaded packages are in
	‘/tmp/RtmpAtNws1/downloaded_packages’
Warning messages:
1: In install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies,  :
  installation of package 'XML' had non-zero exit status
2: In install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies,  :
  installation of package 'RCurl' had non-zero exit status
3: In install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies,  :
  installation of package 'biomaRt' had non-zero exit status
> > library(biomaRt)
Error in library(biomaRt) : there is no package called 'biomaRt'
> ?getBM
No matches for "getBM" have been found
> ?getSequence
No matches for "getSequence" have been found





tutti i telefonini TIM!


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