Hi Greg

It works! Thanks. I've noticed a lot of general Heron-unhappiness re.
ImageMagick. 'Appreciate that ImageMagick isn't really your domain, but it
might be helpful to put up a solution page somewhere.

postcript 1 - my apologies. I sent this off to the wrong list... I really
should have used the Bioconductor list. Careless clicking of 'send to'.

postscript 2 -thanks for the 2.6 spot. I am actually running 2.9. I didn't
notice that my bioconductor libraries are going into my 2.6 folder. Not sure
why that is. Presumably its only a cosmetic problem.

Q

* Quin Wills *
* DPhil candidate *

* *

* Department of Statistics
University of Oxford
1 South Parks road
Oxford
OX1 3TG
+44 (0)1865 285 394
*



2009/6/7 Gregoire Pau <gregoire.pau@embl.de>

> Hi Quin,
>
> This is a well documented bug of Ubuntu 8.10 (Hardy Heron), preventing
> applications using libgomp (EBImage via ImageMagick) to work:
> https://bugs.launchpad.net/ubuntu/hardy/+source/gcc-4.2/+bug/235070
>
> The bug was fixed in the package gcc-4.2.4-3ubuntu3.
>
> Please note that your R version (2.6.2) is pretty outdated.
>
> Best regards,
>
> Greg
> ---
> Gregoire Pau
> EMBL Research officer
> http://www.ebi.ac.uk/~gpau/ <http://www.ebi.ac.uk/%7Egpau/>
>
>
> Quin Wills wrote:
>
>> Hello all
>>
>> I've just spent a few joyless hours trying to get EBImage to install in R.
>> I'm running Ubuntu (Hardy Heron), fully updated (including R and
>> Imagemagick). EBImage installation seems to work, but when I
>> 'library(EBImage)' I get the following:
>>
>> - - - -
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>  unable to load shared library '/home/qilin/R/i486-pc-linux-
>> gnu-library/2.6/EBImage/libs/EBImage.so':
>>  /usr/lib/libgomp.so.1: cannot allocate memory in static TLS block
>> Error: package/namespace load failed for 'EBImage'
>> - - - -
>>
>> Which is meaningless to me. Any help would be enormously appreciated,
>> thanks.
>>
>> Quin
>>
>> * Quin Wills *
>> * DPhil candidate *
>>
>> * *
>>
>> * Department of Statistics
>> University of Oxford
>> 1 South Parks road
>> Oxford
>> OX1 3TG
>> +44 (0)1865 285 394
>> *
>>
>>        [[alternative HTML version deleted]]
>>
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>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>

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