David Winsemius wrote:
> help.search did not offer any clues. Using Baron's search page, I got reference to r-help entries from 2004,  but looking at the current documentation , I see no such function. I am wondering if the name of the function was changed in later versions of the package and you are mixing old documentation or examples with a newer installation of that package?
>
> Here is a 2005 version of the package documentation and it does have that function:
> http://phase.hpcc.jp/mirrors/stat/R/CRAN/doc/packages/Geneland.pdf
>
> Perhaps you want the MCMC function?
>
> Description
> Markov Chain Monte-Carlo inference under various models
>
> Usage
> MCMC( coordinates=NULL, genotypes,## ploidy=2, dominance="Codominant",
> allele.numbers,
> path.mcmc, # path to output directory
> # hyper-prior parameters
> rate.max,delta.coord=0,shape1=2,shape2=20, npopmin=1,npopinit,npopmax,
> # dimensions
> nb.nuclei.max,
> # options in mcmc computations
> nit,thinning=1,freq.model="Uncorrelated", varnpop=TRUE, spatial=TRUE, jcf=TRUE, filter.null.alleles=TRUE, prop.update.cell=0.1, write.rate.Poisson.process=FALSE, write.number.nuclei=TRUE, write.number.pop=TRUE, write.coord.nuclei=TRUE, write.color.nuclei=TRUE, write.freq=TRUE, write.ancestral.freq=TRUE, write.drifts=TRUE, write.logposterior=TRUE, write.loglikelihood=TRUE, write.true.coord=TRUE, write.size.pop=FALSE, miss.loc)

Hello,

You might reach a broader range of Geneland users by sending your post to R-sig-genetics:
https://stat.ethz.ch/mailman/listinfo/r-sig-genetics

Cheers,

Thibaut.

-- 
######################################
Dr Thibaut JOMBART
MRC Centre for Outbreak Analysis and Modelling
Department of Infectious Disease Epidemiology
Imperial College - Faculty of Medicine
St Mary’s Campus
Norfolk Place
London W2 1PG
United Kingdom
Tel. : 0044 (0)20 7594 3658
jombart@biomserv.univ-lyon1.fr
http://biomserv.univ-lyon1.fr/%7Ejombart/
http://adegenet.r-forge.r-project.org/

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