Is there an equivalent to MPlus's Full Information Maximum Likelihood (FIML)
missing data estimator for R? If so, is there a way to take covariance
structures produced by such a package and perform multiple regression with
these?

If you are unfamiliar with Mplus' FIML below is a link to their manual.
Their estimation technology is discussed on page 25. I have asked the
developer of the mvnmle and he was unsure if this package similar.

http://www.statmodel.com/download/techappen.pdf

Thanks,

Sam
-- 
http://theregressingpilgrim.blogspot.com/

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