Thanks your suggestion works -:-)

 

________________________________

From: milton ruser [mailto:milton.ruser@gmail.com] 
Sent: Thursday, June 12, 2008 2:42 PM
To: Manisha Brahmachary
Cc: r-help@r-project.org
Subject: Re: [R] save workspace while running R on a cluster



Hi Manisha,



How about you incluse something like this on your script.R: 



setwd("/your/full/working/directory")   # ?setwd

save.image()    # or save.image("your_workspace.RDA").



By the way, I don´t know if you added the line below to run in background:

R --save < calculate.R >& script.out


May be the rigth thing is

R --save < calculate.R > script.out &



Good luck.



miltinho

Brazil







On 6/12/08, Manisha Brahmachary <mb3058@c2b2.columbia.edu> wrote: 

Hello,



I have a question about running R in a cluster environment. The shell script
I am running looks like this:



#!/bin/bash

cd /nfs/apollo/2/c2b2/users/mb0001/Data

/nfs/apollo/1/shares/software/core_facility/local/x86_64_rocks/R/current/bin/
R --save < calculate.R >& script.out



I have used the "-save" command to save the R workspace (If, I understand it
correctly) . However, I am unable to find the workspace file.

Using find .RData did not help.



I would be obliged if someone can help me figure out where the workspace file
gets saved?



Thanks

manisha














       [[alternative HTML version deleted]]

______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.




	[[alternative HTML version deleted]]

