I am trying to upload into R 143 Affymetrix chips onto using R on the NIH
Nimbus server.  I can load 10 chips without a problem, however, when I try
to load 143 I receive a error message: cannot create a vector of 523263 KB.
I have expanded the memory of R as follows:  R --min-vsize=10M
--max-vsize=2500M --min-nsize=10M -max-nsize=50M (as specified in help in
R).  After running this command the memory in R is as follows:  

 

            Used     (Mb)      gc    trigger        (Mb)        limit
(Mb)      

Ncells   513502 13.8        10485760        280.0                1400

Vcells   142525   1.1        162625696     1240.8                2500

 

However, I am still getting the error cannot create a vector of 523263 KB.
Any suggestions/ideas? 

 

Thanks.,

 

Nina

 

Nina Joshi, PhD

NIH/NCI/ Genetics Branch

National Naval Medical Center, Bldg. 8, Rm. 5101

8901 Wisconsin Ave.

Bethesda, MD. 20889-5101

(301) 435-5436 - phone

(301) 496-0047 - fax

 

 


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