
Hello All,

I have a 131072x132 matrix for which I need to compute a regular euclidean distance matrix, which I then need to transform and run agnes() on this transformed matrix. I am having trouble computing the distance matrix as it is fairly large and I am sure I have gone over the max. 

The specific error I am getting is:
Error in vector("double", length) : negative length vectors are not allowed

I have increased the memory limit to the maximum capacity of my hard drive (which is around 20gb), with no success. 

I am running the RGUI on Windows XP with 512 mb of RAM.

Would anyone have any suggestions as to how I can overcome this problem? I would be most grateful for any help.

Thanks,
Arnav

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