Hi,
I decided to upgrade to 1.8 today... :-)
Anyway, we are writing our own package that is dependent on a
bioconductor library - 'affy'.
I've checked and when I fire up R, library(affy) behaves as expected...
so it all seems to be installed and OK...

In the DESCRIPTION file in my package source I have the line:

Depends: affy

When I run R CMD check simpleaffy

I get to:

...
* checking package dependencies ... ERROR
Packages required but not available:
  WARNING: ignoring environment value of R_HOME
Prompt >

Any ideas what is going on - as far as I can see the only dependency is
to affy which is there and OK... I get no list of packages that are
missing :-(

I'm assuming the warning comes because I have R_ENVIRON pointing to a
.Renviron file in my home directory...

Any help would be much appreciated!
Cheers,
Crispin
 
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