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<P><FONT size=2>Hello Laurent, Ray and Greg,<BR><BR>I tried the gmake
settings.<BR>Yet, I still got an Error code 1 message when I run the
test. <BR><BR><FONT face=Courier size=3>running regression tests<BR>don't
know how to make ../library/base/R/base (bu42).<BR>*** Error code 1
(bu21)<BR></FONT><BR><BR>Thanks you if you have any idea.</FONT></P>
<P><FONT size=2>Manuel</FONT></P>
<DIV><FONT size=2></FONT> </DIV>
<DIV><FONT size=2><FONT face=Arial color=#0000ff></FONT></FONT> </DIV>
<DIV><FONT size=2> </DIV>
<P><BR>-----Message d'origine-----<BR>De : Laurent Gautier [<A
href="mailto:laurent@genome.cbs.dtu.dk">mailto:laurent@genome.cbs.dtu.dk</A>]<BR>Envoyé
: mercredi 24 octobre 2001 10:29<BR>À : Greg Jefferis<BR>Cc : Duval, Manuel;
'R-help@lists.R-project.org'<BR>Objet : Re: [R] Re: Compiling R v 1.3.1 under
Irix 6.5 on SGI Origin<BR><BR><BR>Hello,<BR><BR><BR>I had (and still have) to
deal with SGIs and came across the similar<BR>error message. I remember going
through by setting MAKE=gmake in the<BR>config.site file and by replacing the
'make ; make test; make install' on<BR>the command line by 'gmake; gmake test;
gmake install'<BR>(rem: If I remember well, on a SGI the test bit do not go too
good... this<BR>is (was ?) a reported bug).<BR><BR><BR>Hopin' it
helps,<BR><BR><BR><BR>Laurent<BR><BR><BR><BR><BR><BR><BR><BR>Laurent Gautier
CBS, Building 208, DTU<BR>PhD.
Student
D-2800
Lyngby,Denmark <BR>tel: +45 45 25 24 85
<A target=_blank
href="http://www.cbs.dtu.dk/laurent">http://www.cbs.dtu.dk/laurent</A><BR><BR>On
Tue, 23 Oct 2001, Greg Jefferis wrote:<BR><BR>> Hi,<BR>><BR>> I
wondered if anyone had shed some light on this as I have come on a
similar<BR>> problem on another Origin. The configure output looks like
this<BR>><BR>> > R is now configured for mips-sgi-irix6.5<BR>>
><BR>> > Source
directory: .<BR>> >
Installation directory: /usr/local<BR>> > C
compiler:
gcc -g -O2<BR>> > C++
compiler:
c++ -g -O2<BR>> > FORTRAN
compiler: g77 -g
-O2<BR>> ><BR>> > X11
support:
yes<BR>> > Gnome
support:
no<BR>> > Tcl/Tk
support:
yes<BR>> ><BR>> > R profiling
support: yes<BR>> > R as a shared
library: no<BR>><BR>> and the make output looks
like this around the failure
point<BR>><BR>> gcc -I.
-I../../../src/include -I../../../src/include<BR>> -I/usr/local/include
-DHAVE_CONFIG_H -fPIC -g -O2 -c nanohttp.c -o<BR>>
nanohttp.lo<BR>> gcc -I.
-I../../../src/include -I../../../src/include<BR>> -I/usr/local/include
-DHAVE_CONFIG_H -fPIC -g -O2 -c sock.c -o
sock.lo<BR>> gcc -I.
-I../../../src/include -I../../../src/include<BR>> -I/usr/local/include
-DHAVE_CONFIG_H -fPIC -g -O2 -c sockconn.c -o<BR>>
sockconn.lo<BR>> gcc
-shared -o internet.so Rsock.lo internet.lo nanoftp.lo<BR>>
nanohttp.lo sock.lo sockconn.lo<BR>> making Lapack.d from
Lapack.c<BR>> gcc -I.
-I../../../src/include -I../../../src/include<BR>> -I/usr/local/include
-DHAVE_CONFIG_H -fPIC -g -O2 -c Lapack.c -o
Lapack.lo<BR>> g77
-fPIC -g -O2 -c double.f -o
double.lo<BR>> g77
-fPIC -g -O2 -c cmplx.f -o cmplx.lo<BR>> don't know how to make #
(bu42).<BR>> *** Error code 1 (bu21)<BR>> *** Error code 1 (bu21)<BR>>
*** Error code 1 (bu21)<BR>> *** Error code 1 (bu21)<BR>><BR>><BR>>
Many thanks for any hints,<BR>><BR>> Greg Jefferis<BR>><BR>><BR>>
On 10/23/01 06:39, "Duval, Manuel" <Manuel.Duval@pfizer.com>
wrote:<BR>><BR>> > Dear R contributors,<BR>> ><BR>>
><BR>> > I recently dowloaded the R-1.3.1 on my SGi Origin 200 run by
Irix6.5.<BR>> > In order to instal it, I launched the command shown
below:<BR>> ><BR>> > env MAKE=gmake ./configure<BR>> ><BR>>
> The output was as follow::<BR>> ><BR>> > R is now configured
for mips-sgi-irix6.5<BR>> ><BR>> > Source
directory: .<BR>> >
Installation directory: /usr/local<BR>> > C
compiler:
cc -OPT:IEEE_NaN_inf=ON -g<BR>> > C++
compiler:
CC -OPT:IEEE_NaN_inf=ON -g<BR>> > FORTRAN
compiler: f77
-OPT:IEEE_NaN_inf=ON -g<BR>> ><BR>> > X11
support:
yes<BR>> > Gnome
support:
no<BR>> > Tcl/Tk
support:
no<BR>> ><BR>> > R profiling
support: yes<BR>> > R as a shared
library: no<BR>> ><BR>> > Then, when I test
the installatuion by invoking make check , I got the<BR>> > following
error message:<BR>> ><BR>> >
[duval@svsgi4]/shome/d/duvalm/R-1.2.3/tests> make test-All<BR>> > don't
know how to make ../../library/base/R/base (bu42).<BR>> > *** Error code 1
(bu21)<BR>> > *** Error code 1 (bu21)<BR>> > *** Error code 1
(bu21)<BR>> ><BR>> > Any clue to bypass this problem will be greatly
appreciated.<BR>> ><BR>> > Sincerely<BR>> ><BR>> >
Manuel<BR>> ><BR>> ><BR>>
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.<BR>>
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_.> _<BR>><BR>>
__________________________________________________________________________<BR>>
Greg
Jefferis,
Lab Address: Liqun Luo, Herrin 144<BR>> Neurosciences PhD Programme
&
e-mail: jefferis@stanford.edu<BR>> Dept Biological
Sciences,
Lab: (650) 725 5809<BR>> Gilbert Biology
Building,
Fax: (650) 723 0589<BR>> 371 Serra Mall,<BR>> Stanford, CA
94305-5020.
Home: (650) 497 1135<BR>><BR>>
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