I have decided to place my libraries on CRAN as they stand. Only the
functions, carma, elliptic, glmm, and gnlmm have been tested with
R0.62.3 but most if not all run in 0.62.1 and they all ran at one time
on some version of R. They allow one to perform all of the analyses in
the second edition of my Models for Repeated Measurements (OUP, 1999),
including everything in the first edition and much more. I shall be
happy to send the data file, R code, and output file for any example,
or, conversely, an example for any function, so that users can see how
I handled it. I have tried to document each function adequately, but
it is almost impossible to provide an executable example for repeated
measures in most cases. If there is a problem, please try to fix it
yourself and send me the correction.

Several programs use Fortran or C code written by others. In all
cases, the original information has been left in the code, but in at
least one case (survival kit), even the author was not mentioned,
although the stand-alone program is freely distributed on the Web.
I have adapted some code in Press et al, Numerical Recipes. This is
always acknowledged, but I am not sure of the copyright status once it
is modified for R or translated into R code.

The lists from DESCRIPTION follow. Good luck! Jim

gnlm library
------------

fit.dist	Fit Probability Distributions to Frequency Data
fmr		Generalized Nonlinear Regression with Finite Mixture
gnlr		Generalized Nonlinear Regression
gnlr3		Generalized Nonlinear Regression (3 Parameter Distributions)
int		Numerical Integration
nlr		Nonlinear Regression
nordr		Nonlinear Ordinal Regression
pkpd		Pharmacokinetic Model Functions
rs2		Two-factor Nonlinear Response Surface
rs3		Three-factor Nonlinear Response Surface

growth library
--------------

carma		Normal Theory Repeated Measurements Models
corgram		Calculate and Plot a Correlogram
elliptic	Multivariate Elliptically-contoured Nonlinear Repeated Measurements Models with Time-varying Covariates
gettvc		Create Time-varying Covariates
pergram		Calculate and Plot a Periodogram
plot.iprofile	Plot Individual Time Profiles for carma
plot.profile	Plot Marginal Time Profiles for carma
plot.residuals	Plot Residuals for carma
potthoff	Potthoff and Roy Growth Curve Model
read.list	Read a List of Matrices of Unbalanced Repeated Measurements from a File
restovec	Create a Response Object
tcctomat	Create a Time-constant Covariate (tccov) Object
tvctomat	Create a Time-varying Covariate (tvcov) Object

repeated library
----------------

biv.betab	Bivariate Beta-binomial Regression
biv.binom	Marginal Bivariate Binomial Regression
capture		Capture-recapture Model
catmiss		Marginal Probabilities for Categorical Repeated Measures with Missing Data
gar		Generalized Autoregression
gauss.hermite	Calculate Gauss-Hermite Quadrature Points
gettvc		Create Time-varying Covariates
glmm		Generalized Linear Mixed Models
gnlmm		Generalized Nonlinear Mixed Models
hidden		Hidden Markov Chain Models
kalcount	Generalized Repeated Measurements Models for Counts
kalseries	Generalized Repeated Measurements Models for Continuous Variables
kalsurv		Generalized Repeated Measurements Models for Event Histories
logitord	Ordinal Random Effects Models with Dropouts
marg.hom	Marginal Homogeneity Model
nbkal		Negative Binomial Model with Kalman Update
plot.iprofile	Plot Individual Time Profiles for contkal and kalcount
plot.profile	Plot Marginal Time Profiles for contkal and kalcount
plot.residuals	Plot Residuals for contkal and kalcount
read.list	Read a List of Matrices of Unbalanced Repeated Measurements from a File
read.surv	Read a List of Vectors of Event Histories from a File
restovec	Create a Response Object
rmna		Create a Repeated Object
tcctomat	Create a Time-constant Covariate (tccov) Object
tvctomat	Create a Time-varying Covariate (tvcov) Object

event library
-------------

bp		Create a Vector of Cumulative Numbers of Previous Events for a Point Process
coxre		Cox Proportional Hazards Model with Random Effect
cprocess	Counting Process Plot
ehr		Fit an Intensity Function to Event Histories
hboxcox		Hazard Function for a Box-Cox Process
hburr		Hazard Function for a Burr Process
hcauchy		Hazard Function for a Cauchy Process
hexp		Hazard Function for an Exponential (Poisson) Process
hgamma		Hazard Function for a Gamma Process
hgextval	Hazard Function for an Extreme Value  Process
hggamma		Hazard Function for a Generalized Gamma Process
hglogis		Hazard Function for a Generalized Logistic Process
hgweibull	Hazard Function for a Generalized Weibull Process
hhjorth		Hazard Function for a Hjorth Process
hinvgauss	Hazard Function for a Inverse Gauss Process
hlaplace	Hazard Function for a Laplace Process
hlnorm		Hazard Function for a Log Normal Process
hlogis		Hazard Function for a Logistic Process
hnorm		Hazard Function for a Normal Process
hstudent	Hazard Function for a Student Process
hweibull	Hazard Function for a Weibull Process
ident		Create an Individual Identification Vector for a Point Process
km		Kaplan-Meier Survival Curves
mexp		Matrix Exponentiation
pbirth		Fit a Generalized Negative Binomial Process as a Birth Process
pp		Create a Point Process Vector from Times between Events
read.list	Read a List of Matrices of Unbalanced Repeated Measurements from a File
read.surv	Read a List of Vectors of Event Histories from a File
survkit		Weibull and Cox Models with Random Effects
tccov		Create a Vector of Time-constant Covariates for a Point Process
tpast		Create a Vector of Times Past since Previous Events for a Point Process
ttime		Create a Vector of Total Time Elapsed for each Individual for a Point Process
tvcov		Create a Vector of Time-varying Covariates for a Point Process
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
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