[R] problem installing RGBL library

[varin sacha]

Eric,

Here it is :


library(RBGL)
Loading required package: graph
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:igraph’:

  normalize, path, union

The following objects are masked from ‘package:stats’:

  IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

  anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted, lapply, Map,
  mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max,
  which.min


Attaching package: ‘graph’

The following objects are masked from ‘package:igraph’:

  degree, edges, intersection


Attaching package: ‘RBGL’

The following objects are masked from ‘package:igraph’:

  bfs, dfs, transitivity










Le samedi 22 avril 2023 à 18:12:56 UTC+2, Eric Berger <ericjberger using gmail.com> a écrit : 





What happens with the command
> library(RBGL)



On Sat, Apr 22, 2023 at 7:08 PM varin sacha via R-help <r-help using r-project.org> wrote:
> Dear R-experts,
> 
> How to solve that problem?
> 
> My R version is 4.2.1
> 
> Here below trying to install RGBL library found here : https://bioconductor.org/packages/release/bioc/html/RBGL.html
> 
> So, I run this R code :
> 
> if (!require("BiocManager", quietly = TRUE))
>     install.packages("BiocManager")
> 
> BiocManager::install("RBGL")
> 
> 
> Here is what I get :
> 
>> if (!require("BiocManager", quietly = TRUE))
> + install.packages("BiocManager")
> Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.1 (2022-06-23)
>>
>> BiocManager::install("RBGL")
> Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.1 (2022-06-23)
> Warning message:
> package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'RBGL'
> 
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