[R] Issue installing gamm4 for R v4.2.2
Nedelec, Pierre
P|erre@Nede|ec @end|ng |rom uc@|@edu
Mon Nov 14 21:48:13 CET 2022
Hello,
I'm having issues installing the package gamm4 with R v4.2.2. It seems to fail because of the required package minqa. (ERROR: compilation failed for package �minqa� below). minqa is not listed as a requirement on the gamm4 package<https://cran.r-project.org/package=gamm4>, but maybe it is a requirement for one of the other required packages? Anyway, I'm not sure how to debug this, and any help would be appreciated.
Thank you!
Here's the session info and detail log:
> sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: x86_64-apple-darwin21.6.0 (64-bit)
Running under: macOS Monterey 12.6.1
Matrix products: default
BLAS: /usr/local/Cellar/openblas/0.3.21/lib/libopenblasp-r0.3.21.dylib
LAPACK: /usr/local/Cellar/r/4.2.2/lib/R/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.2.2 tools_4.2.2
> install.packages('gamm4')
Installing package into �/usr/local/lib/R/4.2/site-library�
(as �lib� is unspecified)
also installing the dependencies �minqa�, �lme4�
trying URL 'https://cran.case.edu/src/contrib/minqa_1.2.5.tar.gz'
Content type 'application/x-gzip' length 54415 bytes (53 KB)
==================================================
downloaded 53 KB
trying URL 'https://cran.case.edu/src/contrib/lme4_1.1-31.tar.gz'
Content type 'application/x-gzip' length 2947739 bytes (2.8 MB)
==================================================
downloaded 2.8 MB
trying URL 'https://cran.case.edu/src/contrib/gamm4_0.2-6.tar.gz'
Content type 'application/x-gzip' length 14969 bytes (14 KB)
==================================================
downloaded 14 KB
* installing *source* package �minqa� ...
** package �minqa� successfully unpacked and MD5 sums checked
** using staged installation
** libs
/usr/local/opt/gcc/bin/gfortran -fno-optimize-sibling-calls -fPIC -g -O2 -c altmov.f -o altmov.o
altmov.f:42:72:
42 | 10 HCOL(K)=ZERO
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
altmov.f:45:72:
45 | DO 20 K=1,NPT
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1)
altmov.f:46:72:
46 | 20 HCOL(K)=HCOL(K)+TEMP*ZMAT(K,J)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
altmov.f:53:72:
53 | 30 GLAG(I)=BMAT(KNEW,I)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1)
altmov.f:57:72:
57 | 40 TEMP=TEMP+XPT(K,J)*XOPT(J)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1)
altmov.f:59:72:
59 | DO 50 I=1,N
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 50 at (1)
altmov.f:60:72:
60 | 50 GLAG(I)=GLAG(I)+TEMP*XPT(K,I)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1)
altmov.f:76:72:
76 | 60 DISTSQ=DISTSQ+TEMP*TEMP
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1)
altmov.f:173:72:
173 | 90 XNEW(I)=DMAX1(SL(I),DMIN1(SU(I),TEMP))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1)
altmov.f:238:72:
238 | 140 GW=GW+GLAG(I)*W(I)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1)
altmov.f:249:72:
249 | 150 TEMP=TEMP+XPT(K,J)*W(J)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1)
altmov.f:250:72:
250 | 160 CURV=CURV+HCOL(K)*TEMP*TEMP
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1)
altmov.f:256:72:
256 | 170 XALT(I)=DMAX1(SL(I),DMIN1(SU(I),TEMP))
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1)
altmov.f:269:72:
269 | 180 W(N+I)=XALT(I)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1)
altmov.f:276:72:
276 | 190 XALT(I)=W(N+I)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1)
clang (LLVM option parsing): Unknown command line argument '-x86-pad-for-align=false'. Try: 'clang (LLVM option parsing) --help'
clang (LLVM option parsing): Did you mean '--x86-slh-loads=false'?
make: *** [altmov.o] Error 1
ERROR: compilation failed for package �minqa�
* removing �/usr/local/lib/R/4.2/site-library/minqa�
ERROR: dependency �minqa� is not available for package �lme4�
* removing �/usr/local/lib/R/4.2/site-library/lme4�
ERROR: dependency �lme4� is not available for package �gamm4�
* removing �/usr/local/lib/R/4.2/site-library/gamm4�
The downloaded source packages are in
�/private/var/folders/2q/qbb1m4q52md022yt2cqbd9mm0000gn/T/RtmpYkdEv8/downloaded_packages�
Warning messages:
1: In install.packages("gamm4") :
installation of package �minqa� had non-zero exit status
2: In install.packages("gamm4") :
installation of package �lme4� had non-zero exit status
3: In install.packages("gamm4") :
installation of package �gamm4� had non-zero exit status
--
Pierre
[[alternative HTML version deleted]]
More information about the R-help
mailing list