[R] problem with creation of /doc/index.html

[Bert Gunter]

I believe the R-package-devel list is where you should post this, not
here (though you might get lucky here). See here for details:
https://www.r-project.org/mail.html

Bert Gunter

"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )

On Thu, Nov 11, 2021 at 11:10 PM Oleksandr Ocheredko via R-help
<r-help using r-project.org> wrote:
>
> I use macOS BigSur v.11.5
> R v.4.0.5 macOS
> package «ltable» does power analysis based on GSL-2.7
> Xcode v.13.1
>
> It goes smoothly with all OK on Checking, building, installing both with R and RStudio v. 1.3.1093
> The only problem appears with Installing package in RStudio immediately after deleting it (no help.rd file found) which is solved just by rebooting RStudio
>
> Description file:
>
> Package: ltable
> Type: Package
> Title: Easy to Make (Lazy) Tables
> Version: 2.0.1
> Date: 2021-10-02
> Author: Ocheredko Oleksandr
> Description: Constructs tables of counts and proportions out of data sets. It has simplified syntax appealing for novice and even for advanced user under time pressure. It is particularly suitable for exploratory data analysis or presentation to single out most appropriate pieces of tabulated information. The other important feature is possibility to insert tables to Excel and Word documents. This version also features capacity of log-linear and power analyses for tabulated data with GSL.
> Maintainer: Ocheredko Oleksandr <Ocheredko using yahoo.com>
> License: GPL (>= 2)
> Depends: R (>= 4.0.0), methods, clipr
> Imports: Rcpp (>= 1.0.5), RcppGSL (>= 0.3.9), graphics, stats
> Suggests:
>     MCMCglmm,
>     knitr,
>     rmarkdown,
>     datasets
> VignetteBuilder: knitr
> Collate: PowerPoisson.R RcppExports.R Plot.R Print.R table_f.R tableToData.R
> SystemRequirements: GSL
> NeedsCompilation: yes
> OS_type: macOS
> LinkingTo: Rcpp, RcppGSL
>
> ltable/vignettes/ltable.rmd:
> ---
> title: "ltable"
> output: rmarkdown::html_vignette
> vignette: >
>   %\VignetteIndexEntry{ltable}
>   %\VignetteEngine{knitr::rmarkdown}
>   %\VignetteEncoding{UTF-8}
> ---
>
> Upon submitting to CRAN I received:
> * installing *source* package ‘ltable’ ...
> ** using staged installation
> checking for gcc... gcc
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> checking for gsl-config... /usr/bin/gsl-config
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> g++-11  -std=gnu++14 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I'/home/hornik/lib/R/Library/4.2/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.2/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c GSLPoisson.cpp -o GSLPoisson.o
> g++-11  -std=gnu++14 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I'/home/hornik/lib/R/Library/4.2/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.2/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c RcppExports.cpp -o RcppExports.o
> g++-11 -std=gnu++14 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ltable.so GSLPoisson.o RcppExports.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R/lib -lR
> installing to /srv/hornik/tmp/CRAN/ltable.Rcheck/00LOCK-ltable/00new/ltable/libs
> ** R
> ** data
> ** inst
> ** byte-compile and prepare package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> Warning in file(con, "w") :
>   cannot open file ‘/srv/hornik/tmp/CRAN/ltable.Rcheck/00LOCK-ltable/00new/ltable/doc/index.html’: No such file or directory
> Calls: <Anonymous> ... installer -> .writeVignetteHtmlIndex -> writeLines -> file
> Error in file(con, "w") : cannot open the connection
> ERROR: installing vignettes failed
> * removing ‘/srv/hornik/tmp/CRAN/ltable.Rcheck/ltable’
>
> Please, help me out with issue
> I checked Google to no avail
> Thanks. Oleksandr
>
>
>         [[alternative HTML version deleted]]
>
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